EY676195

Overview
NameEY676195
Unique NameEY676195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.162e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.017e-31
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.224e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.386e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.287e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 2
Query:   59 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 247
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.332e-23
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 2
Query:  254 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHGNQLRPKKKIK 409
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGH NQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.271e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  254 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHGNQLRPKKKIK 409
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGH NQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.271e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  254 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHGNQLRPKKKIK 409
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGH NQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.060e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  254 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHGNQLRPKKKIK 409
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGH NQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of EY676195 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.626e-21
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  254 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHGNQLRPKKKIK 409
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52          
The following BLAST results are available for this feature:
BLAST of EY676195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
UBIQ_LEIMA3.162e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.017e-3190.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP5.224e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC3.386e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE1.287e-2695.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RL40_NICSY1.332e-2396.1560S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ2.271e-2396.1560S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH2.271e-2396.1560S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA5.060e-2396.1560S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE3.626e-2188.4660S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-019-H05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676195 ID=EY676195; Name=EY676195; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGATCAGAGCGTGAAGATGCAGATCTTCGTGAAAACCCTAA
CCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGACACCATCGACAAT
GTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCCCGGATCAGCAGCG
TCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATT
ACAATATTCAGAAAGAATCCACTCTTCATTTGGTGCTGAGGCTTAGGGGA
GGTATCATTGAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAGGA
TAAGATGATTTGCCGCAAATGTTATGCTCGTCTGCATCCCAGGGCTGTAA
ATTGCCGGAAGAAGAAATGTGGCCACGGCAATCAGTTGAGGCCTAAGAAG
AAGATCAAGTAGACCACTTGCCTTAGTCATGATATGTGCCTTCAGAGAGA
CTTTCCAATTATGAGATGTATTTTGTTTGTTTTTTAATAGGAATTTGGGA
ATTTGAATTAAGCGATCCTCTAATTTGGATTGTAGTTGATTCAATTCAAG
TGCAATTCGGTTTAACCTTTACGGGTAAAAAATTGGGAAGAAATTTTTGA
ACCGAACGAGAAGAAACAAATAAACCAAAAACAACCATCGAACATACAAC
ACGGGGCGAACGGAAAAAAAGAAGTCGGAATAAGAGTGTAAAAGTAGAAG
GGGGGGCCGCCCCCTAAAAGAATGACAAATATAGGTGCACGGGTGAGGGA
GCAGTTAGCAAACACATATATGAATTAGTACCAAAAGTAAAAATAATAGA
GAGAGGATTATTTTAAAGACAGGATAAGAAGGGGAGAAGAACAAGGGGGT
GCAGACCAAATGGATTTTCCCGCCAGATGAACCACCAAGCCGCGAAATGG
CGGCCAG
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