EY658298

Overview
NameEY658298
Unique NameEY658298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1049
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.456e-11
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 1
Query:   70 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVA 399
            +++  A+  LP   + +  GGA  EHTL+ NVE    I  R R+L D+S + L T +    ++ P+ +AP  L  +    GEV  ARAAAS      LS  S   I EVA
Sbjct:    8 DYRHAAKRRLPPFLFHYADGGAYAEHTLRRNVEDLAGIALRQRVLKDMSHLSLETELFGEPLAMPVALAPVGLAGMYARRGEVQAARAAASKGIPFTLSTVSVCPIAEVA 117          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVAGPAPK 414
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   I+EVA PA K
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA-PAIK 121          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVAGPAPK 414
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   I+EVA PA K
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA-PAIK 121          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVAGPAPK 414
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   I+EVA PA K
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA-PAIK 121          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVAGPAPK 414
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   I+EVA PA K
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA-PAIK 121          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVAGPAPK 414
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   I+EVA PA K
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIPFTLSTVSVCPIEEVA-PAIK 121          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVAGPAPK 414
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   I+EVA PA K
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA-PAIK 121          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   67 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVA 399
            ++++  A+  LP+  +D+  GGA  EHTL+ N      I+ R R+L +V  + L T +    ++ PII++P  L  +    GEV  ARAAA+      LS  S  +I+EVA
Sbjct:    7 SDYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVA 117          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   70 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVA 399
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST + D  +S P+ +AP  L  +    GEV  ARAAA+      +S  S   I+EVA
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLNNMSELSLSTRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVA 117          
BLAST of EY658298 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.208e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   70 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFPSSNTIKEVA 399
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S +DLST +   K+S P+ +AP  L  +    GEV  A+AAA+      LS  S   I+EVA
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVA 117          
The following BLAST results are available for this feature:
BLAST of EY658298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LLDD_CHRSD2.456e-1137.27L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_SHISS3.208e-1136.21L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL3.208e-1136.21L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF83.208e-1136.21L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS3.208e-1136.21L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS3.208e-1136.21L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB33.208e-1136.21L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_PSEU23.208e-1135.14L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEPG3.208e-1136.36L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEMY3.208e-1137.27L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-135-G04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY658298 ID=EY658298; Name=EY658298; organism=Citrus sinensis; type=EST; length=1049bp
CCACGCGTCCGCGGACGCGTGGGTTTAGGAATTAGGTTTCAAATGGCAGC
TGAACCTGTTAATTTGAATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTC
CAAAAATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACC
CTAAAAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGCCAAGAAT
TCTTGTCGATGTCAGCAGAATAGATTTATCGACTACTATACTTGATTACA
AAATCTCGGCTCCCATTATCATTGCTCCAACGGCTTTGCATAAGCTTGCA
AACCCTGAAGGAGAGGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACAC
CATAATGGTTTTATCCTTCCCATCTAGCAACACCATAAAGGAGGTTGCGG
GCCCAGCTCCAAAGCTGTTCGCTTCTATCAGTTTATTTGGTATTCAAGAA
ACGAGAAATAACAGCTAACCTCCAGTGGCAAAAGCTGAAAAGGAAAGGGT
TTTAAGGGCCTTGGCCCCAAACTGTTGAAAACCCCAGAAACTTGGTTGAA
AGGGGGAGGCAGAATATAAGAACAAAAATGATTACCCCGCCATTGAAAAA
ATTTGGAAAAGGCCCCTTATCAACCCAAAGTCCAGCTCCGAAAACAGGGT
TCAAAATTTTGGAAGCCAGAAGGCCAAAGGAAACCACGGGGAGGGCTTCT
TTTAAAGTTGGGAAGGGATTTTTAAAGAGGCGAAAAAATCTATTAACAAA
ACTTCACCAATTTTTTGATTTAAGGGGGGAAAAATTATCACGGGGAAAAA
AATCACTAAAAAACACCTGGGGAAAAATGGGGGTTTTGCGGGGGAATTTT
TTTTGTGCCCCTCTCTTACTGGAGGTTCCCACAAGTATGTATAAATATAA
TGAACTCGGCCGCCCTATTTTTTTTTTTGTGCGCCTCGTAGGAAGAGAGA
GGGGGTGGGGTGCATATGCGGCGTCTTTTGTATGAAGTAGAAAAGGAAAT
TGATACCCCTCACACTATTATTTTGTTTGTGTTTGGTGATAGAGGAGTG
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