EY658224

Overview
NameEY658224
Unique NameEY658224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.089e-45
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 2
Query:  149 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA 445
            GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH +WAM G +LGCVFPELLARNGVKFGEA
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG-ALGCVFPELLARNGVKFGEA 124          

HSP 2 Score: 28.4906 bits (62), Expect = 4.089e-45
Identity = 33/86 (38.37%), Postives = 43/86 (50.00%), Query Frame = 1
Query:  481 TRAGLDYLGEPQA*SHDPKLLGPPGAWPVGLEREPI*GLKKLAGGAPREK*LNPLSPKGALF*PLWGLGRKP*KVFG*TLKVKEIK 738
            +  GLDYLG P    H   +L     W V +         ++AGG P  + ++PL P G+ F PL GL   P + F   LKVKEIK
Sbjct:  135 SEGGLDYLGNPSL-IHAQSIL---AIWAVQVVLMGAVEGYRIAGG-PLGEVVDPLYPGGS-FDPL-GLADDP-EAFA-ELKVKEIK 211          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.043e-45
Identity = 90/120 (75.00%), Postives = 99/120 (82.50%), Query Frame = 2
Query:  113 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA 445
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH +WAM G +LGCVFPELLARNGVKFGEA
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG-ALGCVFPELLARNGVKFGEA 141          

HSP 2 Score: 24.6386 bits (52), Expect = 9.043e-45
Identity = 32/86 (37.21%), Postives = 40/86 (46.51%), Query Frame = 1
Query:  481 TRAGLDYLGEPQA*SHDPKLLGPPGAWPVGLEREPI*GLKKLAGGAPREK*LNPLSPKGALF*PLWGLGRKP*KVFG*TLKVKEIK 738
            +  GLDYLG PQ   H   +L     W   +         ++AGG P  +  +P+ P G  F PL GL   P   F   LKVKEIK
Sbjct:  152 SEGGLDYLGSPQL-IHAQSIL---AIWACQVILMGAIEGYRVAGG-PLGEVTDPIYP-GGNFDPL-GLADDP-DAFA-ELKVKEIK 228          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.002e-44
Identity = 90/120 (75.00%), Postives = 99/120 (82.50%), Query Frame = 2
Query:  113 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA 445
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH +WAM G +LGCVFPELLARNGVKFGEA
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG-ALGCVFPELLARNGVKFGEA 141          

HSP 2 Score: 23.483 bits (49), Expect = 2.002e-44
Identity = 31/86 (36.05%), Postives = 40/86 (46.51%), Query Frame = 1
Query:  481 TRAGLDYLGEPQA*SHDPKLLGPPGAWPVGLEREPI*GLKKLAGGAPREK*LNPLSPKGALF*PLWGLGRKP*KVFG*TLKVKEIK 738
            +  GLDYLG PQ   H   +L     W   +         ++AGG P  +  +P+ P G  F PL GL   P   F   +KVKEIK
Sbjct:  152 SEGGLDYLGSPQL-IHAQSIL---AIWACQVILMGAIEGYRVAGG-PLGEVTDPIYP-GGNFDPL-GLADDP-DAFA-DVKVKEIK 228          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.166e-44
Identity = 112/216 (51.85%), Postives = 132/216 (61.11%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEARGGSKAGDPNLQRGRAWITWGNPKPDPTTQSSLGHLG--LGQWVLKGNPFKG*KNWR--EGPLGKSD*THCPPRGHFFNPCGVWGENPERF 706
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHC+WAM G +LGCVFPELLARNGVKFGEA           + G  ++  GNP        SL H    L  W  +       + +R   GPLG+      P  G  F+P G+  E+PE F
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLG-ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL--GNP--------SLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYP--GGSFDPLGL-AEDPEAF 215          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.870e-42
Identity = 108/190 (56.84%), Postives = 124/190 (65.26%), Query Frame = 2
Query:  143 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEARGGSKAGDPNLQRGRAWITWGNPKPDPTTQSSLGHLGLGQWVLKGNPFKG*KNWR--EGPLGKSD*THCPPRGHFFNPCGVWGENPERF 706
            NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC+WAM G +LGCVFPELLA+NGVKFGEA    KAG    Q G      GN  P+     S+  +   Q VL G      + +R   GPLG+      P  G  F+P G+  E+PE F
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG-ALGCVFPELLAKNGVKFGEA-VWFKAGSQIFQEG-GLDYLGN--PNLVHAQSILAIWACQVVLMG----AVEGYRVGGGPLGEGLDQLYP--GGAFDPLGL-AEDPEAF 205          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.216e-42
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 2
Query:  170 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA 445
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH +WAM G +LGCVFPELL+RNGVKFGEA
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG-ALGCVFPELLSRNGVKFGEA 91          

HSP 2 Score: 26.9498 bits (58), Expect = 5.216e-42
Identity = 36/107 (33.64%), Postives = 50/107 (46.73%), Query Frame = 1
Query:  481 TRAGLDYLGEPQA*SHDPKLLGPPGAWPVGLEREPI*GLKKLAGGAPREK*LNPLSPKGALF*PLWGLGRKP*KVFG*TLKVKEIKKKGNG--------GLFLPLVL 777
            +  GLDYLG P    H   +L     W   +         ++AGG P  + ++PL P G+ F PL GL   P + F   LKVKE+K   NG        G F+P ++
Sbjct:  102 SEGGLDYLGNPSL-VHAQSIL---AIWATQVILMGAVEGYRIAGG-PLGEVVDPLYPGGS-FDPL-GLAEVP-EAFA-ELKVKELK---NGRLAMFSMFGFFVPAIV 196          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.956e-41
Identity = 88/115 (76.52%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA 445
            G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF         GLSADPETFAKNRELEVIH +WAM G +LGCVFPELLARNGVKFGEA
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLG-ALGCVFPELLARNGVKFGEA 119          

HSP 2 Score: 23.483 bits (49), Expect = 1.956e-41
Identity = 29/86 (33.72%), Postives = 40/86 (46.51%), Query Frame = 1
Query:  481 TRAGLDYLGEPQA*SHDPKLLGPPGAWPVGLEREPI*GLKKLAGGAPREK*LNPLSPKGALF*PLWGLGRKP*KVFG*TLKVKEIK 738
            +  GLDYLG P    H   +L     W   +         ++AGG P  +  +P+ P G+ F PL GL   P  +    LKVKE+K
Sbjct:  130 SEGGLDYLGNPSL-IHAQSIL---AIWATQVILMGAVEGYRIAGG-PLGEVTDPIYPGGS-FDPL-GLADDPEALA--ELKVKELK 206          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.509e-41
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = 2
Query:  149 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGE 442
            GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHC+WA+    LGCVFPELLARNGVKFGE
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAI-AVGLGCVFPELLARNGVKFGE 126          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.245e-40
Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 2
Query:  146 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA---RGGSK---------AGDPNL 478
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC+WAM G +LGCVFPE+L++NGVKFGEA   + GS+          G+PNL
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG-ALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNL 151          
BLAST of EY658224 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.946e-40
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 2
Query:  119 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCKWAMFGSSLGCVFPELLARNGVKFGEA 445
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH +WAM G +LGCVFPE+L++NGVKFGEA
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG-ALGCVFPEILSKNGVKFGEA 126          

HSP 2 Score: 24.2534 bits (51), Expect = 7.946e-40
Identity = 32/87 (36.78%), Postives = 41/87 (47.13%), Query Frame = 1
Query:  481 TRAGLDYLGEPQA*SHDPKLLGPPGAWPVGLEREP-I*GLKKLAGGAPREK*LNPLSPKGALF*PLWGLGRKP*KVFG*TLKVKEIK 738
            +  GLDYLG P    H   +L     W V +     + G +   GG P  + L+ + P GA F PL GL   P   F   LKVKE+K
Sbjct:  137 SEGGLDYLGNPNL-VHAQSIL---AIWAVQVVLMGFVEGYR--VGGGPLGEGLDKVYPGGA-FDPL-GLADDP-DTFA-ELKVKELK 213          
The following BLAST results are available for this feature:
BLAST of EY658224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB22_ORYSJ4.089e-4583.17Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PINSY9.043e-4575.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_PYRPY2.002e-4475.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2B_PINSY3.166e-4451.85Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_SILPR3.870e-4256.84Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PEA5.216e-4284.78Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_SOYBN1.956e-4176.52Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE2.509e-4181.00Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_GOSHI1.245e-4068.29Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_ORYSJ7.946e-4070.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-134-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY658224 ID=EY658224; Name=EY658224; organism=Citrus sinensis; type=EST; length=934bp
CTTCTCTTGCTTACCAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAAT
TAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTC
GGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGG
CCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCC
CGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAG
CCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACAC
TGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCG
AAGTCATCCACTGCAAATGGGCCATGTTTGGGAGCTCCTTGGGATGCGTC
TTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCCGTGG
TGGTTCAAAGGCGGGGGACCCAAATCTTCAACGAGGGCGGGCTTGGATTA
CTTGGGGGAACCCCAAGCCTGATCCCACGACCCAAAGCTCCTTGGGCCAC
CTGGGGCTTGGCCAGTGGGTCTTGAAAGGGAACCCATTTAAGGGTTAAAA
AAATTGGCGGGAGGGGCCCCTCGGGAAAAGTGACTGAACCCATTGTCCCC
CAAGGGGGCACTTTTTTAACCCCTGTGGGGTTTGGGGAGAAAACCCTGAA
AGGTTTTTGGGTGAACCTTAAAGGTAAAAGAAATCAAAAAAAAAGGAAAT
GGTGGGCTTTTTTTACCCCTAGTTTTGGTTATCTCTCATAAATGACTTCA
TTTCCACAAAGCAAAAAGAGAAACACAATAAAAAAAAAAATTGATGAGAA
ACCCGCGGTAACGTACGGAAACCCCTCGTATAGAAATAAAACAGTATCGG
GGGGGGGGGAGTCACTCTCCACACCCCACATATC
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