EY675933

Overview
NameEY675933
Unique NameEY675933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 45/159 (28.30%), Postives = 74/159 (46.54%), Query Frame = 3
Query:   75 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLD 551
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      +++ +D
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVD 158          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.855e-12
Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = 3
Query:   90 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620
            KRL  P+   + +    + P P  G HK+   + L+ ++R+ L+ +   RE   IL    V VDGKV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   + +   L   +      +  GN   +TGG
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGG 180          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.953e-12
Identity = 49/177 (27.68%), Postives = 85/177 (48.02%), Query Frame = 3
Query:   90 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620
            K + AP+   + +    +A     G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  +++ + + K   +       GN V +TGG
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGG 180          
The following BLAST results are available for this feature:
BLAST of EY675933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HALS32.356e-1228.3030S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_THEVO6.855e-1227.1230S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_PICTO8.953e-1227.6830S ribosomal protein S4e OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-016-G03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675933 ID=EY675933; Name=EY675933; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGAAGAGAACAGACAAGCCCCCTTAGCGAGGCAGCAGCTTC
AAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAA
TGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTA
AGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTT
GTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGC
TATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATA
AGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAAC
GAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTC
CCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCC
AGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACC
ATCCGCTACCCTGACCCACTCATCAAAGCCAATGAAACCATCAAACTTGA
CTTAAAAAAGACAAGAACACTGACTTCCTCAATTTTGATGTTGGGAAATA
TTGTCAGGGTCACCGGGGGGTAAAACAAAAGGTCGGGGTTGGAATCCTCC
AAAAACGGGAAAAAACCAAAAGGAAATTTTTGAAAACCACCCCATTTCCA
AAAACCCCTTGGGCCATAAATTTGGCCACCCCTCCAAGGAAAAAGGTTTC
CCACCCTCGGGAAAGGGGGTTAAAAACACTGGGGGGTTCCCCTTTTCAAA
GGGGGAAGGGGGTTTTTAAATTTTTCCCCCATTTTTTGAAAAAAAACCCA
AAAAAAAAAAAAAGGGGGCCCCCCCCGCGCGCCGTCTTTAAAAATTTTTT
TTAAAAAA
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