EY675933

Overview
NameEY675933
Unique NameEY675933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 6.313e-66
Identity = 126/189 (66.67%), Postives = 148/189 (78.31%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILM-LGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK N+T+++DL  T  +TS I    GN+  V GG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDL-GTGKITSFIKFDTGNVCMVIGGAN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.313e-66
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK N+TIKL+L+  +  +         V VTGG N
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.313e-66
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK N+TIKL+L+  +  +         V VTGG N
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 6.313e-66
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK N+TIKL+L+  +  +         V VTGG N
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 8.244e-66
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK N+T++++L+  +         GN+  VTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGAN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 1.077e-65
Identity = 123/188 (65.43%), Postives = 144/188 (76.60%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK N+TI++DL+  +         GN+  VTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGAN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK N+T+++DL   + +       GN+  V GG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK N+T+++DL   + +       GN+  V GG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK N+T+++DL   + +       GN+  V GG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
[Close]
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 3 
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK N+T+++DL   + +       GN+  V GG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
The following BLAST results are available for this feature:
BLAST of EY675933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4Y2_PANTR6.313e-6666.6740S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4C_SCHPO6.313e-6664.8940S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO6.313e-6664.8940S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4A_SCHPO6.313e-6664.8940S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y1_MONDO8.244e-6664.8940S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO1.077e-6565.4340S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4Y1_PANTR1.406e-6564.3640S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA1.406e-6564.3640S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN1.406e-6564.3640S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO1.406e-6564.3640S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-016-G03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675933 ID=EY675933; Name=EY675933; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGAAGAGAACAGACAAGCCCCCTTAGCGAGGCAGCAGCTTC
AAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAA
TGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTA
AGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTT
GTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGC
TATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATA
AGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAAC
GAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTC
CCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCC
AGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACC
ATCCGCTACCCTGACCCACTCATCAAAGCCAATGAAACCATCAAACTTGA
CTTAAAAAAGACAAGAACACTGACTTCCTCAATTTTGATGTTGGGAAATA
TTGTCAGGGTCACCGGGGGGTAAAACAAAAGGTCGGGGTTGGAATCCTCC
AAAAACGGGAAAAAACCAAAAGGAAATTTTTGAAAACCACCCCATTTCCA
AAAACCCCTTGGGCCATAAATTTGGCCACCCCTCCAAGGAAAAAGGTTTC
CCACCCTCGGGAAAGGGGGTTAAAAACACTGGGGGGTTCCCCTTTTCAAA
GGGGGAAGGGGGTTTTTAAATTTTTCCCCCATTTTTTGAAAAAAAACCCA
AAAAAAAAAAAAAGGGGGCCCCCCCCGCGCGCCGTCTTTAAAAATTTTTT
TTAAAAAA
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