EY675933
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.406e-25 Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 69 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LK A RE I+ +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K +++ + L + + G + +TGG Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGG 193
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.406e-25 Identity = 65/192 (33.85%), Postives = 105/192 (54.69%), Query Frame = 3 Query: 69 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG R + +PAG MDV+SIP+ +EN+ +L+D GR L + ++ KLCK+ + + G +N +DGR + + + K +++ + + + + G + +TGG Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGG 193
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.573e-24 Identity = 71/197 (36.04%), Postives = 107/197 (54.31%), Query Frame = 3 Query: 63 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626 MAR G KKHLK L APK W + + +A KPS GPH C PL++++R+ L YA T RE ++ + H VDG+VR + YP G MDV+ I T E +R++ L + EEAK+KL ++ + + G +N +DGR I+ DP + K T+++ + + + L L G +V ++GG N Sbjct: 1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRN 197
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.573e-24 Identity = 57/142 (40.14%), Postives = 88/142 (61.97%), Query Frame = 3 Query: 69 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDG 494 +G K+HLKRL AP W +++ +A +P GPH R +PL+ ++R+ L YA T RE IL + LVDG+VR D +P G MDVVSIP+T E++R+L + G+ LH + ++EA K ++R+ + + +N +DG Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG 145
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.504e-24 Identity = 66/197 (33.50%), Postives = 106/197 (53.81%), Query Frame = 3 Query: 69 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILML-------------GNIVRVTGG 620 +G +KHLKRL AP +W L + F +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG R + +PAG MDV+SIP+ +E + +L+D GR L + ++ KLCK+ + + G +N +DGR + ++K ++ K + +T S ++ + G + +TGG Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGR-----NQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGG 193
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.807e-24 Identity = 67/183 (36.61%), Postives = 95/183 (51.91%), Query Frame = 3 Query: 72 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620 G +KHLK APK W + + KPS+G H L L LV+R+ LK A RE I+ +VLVDG+V D +P GFMD++ IPKT E +R+L D KGR +L+ + EE KLCK+ + + G +N +DG+ + + + I L + L G V +TGG Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGG 185
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22 Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = 3 Query: 72 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP 518 G K+H+KRL AP W + K GG FAP+P GPH +PL++++R+ L YA RE I+ + + VDG VR + +P G MDVV IP+T + +R++ + R + + +EEA+ K+C++++ + + G I +DG+ + DP Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDP 158
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.511e-22 Identity = 61/155 (39.35%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 63 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP 518 MAR G ++ LK L AP+ W + + +A KP GPH + + LPL+L++RN L YA T RE ++ + H VDG VR D +P GFMDV+ + T E FR+L F+LH + +EE K ++ + + G +N +DGR I R DP Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDP 155
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.280e-22 Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = 3 Query: 84 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANETIKLDLKKTRTLTSSILM-LGNIVRVTGG*N 626 HL+R +P W + K GG +A +PS GPH +PL LV+R+ L+YA T RE I+ + ++ VDG VR + +P G MDVV I T E +R++ D + + L + EEA KL +V + G ++ +DGR + P IK +++ DL K RT+ S I M LG VT G N Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDL-KARTVRSHIPMRLGVYAVVTHGGN 187
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.595e-22 Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 3 Query: 72 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620 G +HLK L AP ++ + K + KPS GPH E +PL+L++R+ LK A T RE I+ + +LVDGK R D + G MDV+SIP+ N+R++ D RL + E+K KL KV + + G + ++DGR +K +++ ++L + G+ V VT G Sbjct: 5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRG 187 The following BLAST results are available for this feature:
BLAST of EY675933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY675933 ID=EY675933; Name=EY675933; organism=Citrus sinensis; type=EST; length=908bpback to top |