EY675933

Overview
NameEY675933
Unique NameEY675933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.753e-18
Identity = 60/191 (31.41%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   84 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANE----------TIKLDLKKTRTLTSSILMLGNIVRVTGG*N 626
            H+ R  AP    + K    +  +  +GPHK +E +PL ++L+  LK   T RE   I+    VLVDGKVR D  YP G MDVV IP  +   R++ D        ++  E+AK+K  ++ +    + G+  +N  DGR I     L+K  E          T+K++L + +  T+  +  G    + GG N
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNI-----LLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRN 188          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.426e-17
Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   75 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRT------------IRYPDPLIKANETIKLD 551
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT            + Y  P  K  E I L+
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTFLGDNSYKTHYGVVYEIPNFKIREVIPLE 176          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.207e-16
Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   84 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLK---KTRTLTSSILMLGNIVRVTGG*NKRSGL 641
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ ++I L LK   K   +       GN+  + GG  K SG+
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGG--KHSGV 188          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.825e-16
Identity = 55/167 (32.93%), Postives = 82/167 (49.10%), Query Frame = 3
Query:   84 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSI 584
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVDG+VR D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  DGR +     LI    T    L    TL  SI
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNL-----LISKESTEMFKLPTLTTLKISI 164          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.565e-14
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   75 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD 515
            +  H KRL  PK W +++   A+  K ++GPH   E +PL++VLR+ L Y  + +E    L Q  +L++G   +D+  P G  D+++  +  E +R+  D  GR  L  + ++ A  KL K+        G   ++ +DG T+   D
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVED 146          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.131e-13
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   75 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD 515
            +  H KRL+ P  W +++    F  K  +GPH     +PL++VLR+ L YA   +E    L + +VL++GK  +D+  P G  D+++  +  E +R+     GR  L ++  + A+ KL K+ +      G   +  +DG T+   D
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVED 146          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 46/186 (24.73%), Postives = 86/186 (46.24%), Query Frame = 3
Query:   63 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ +++     A   +E   ++    + V+GK      +P   MD +S P  N+++R+L    G+  ++ +   E   K+CKV  +         I T D R ++     IK  +++ +       + +    +G++  +T G
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRG 186          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 3
Query:   75 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI 503
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G   +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNV 142          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 51/177 (28.81%), Postives = 80/177 (45.20%), Query Frame = 3
Query:   90 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLDLKKTRTLTSSILMLGNIVRVTGG 620
            KRL   +   + +    + P P+ G H   + + L+ ++R+ LK +   RE   IL    V VDGK   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  +   + +   +      +  GN   +T G
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAG 180          
BLAST of EY675933 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 45/159 (28.30%), Postives = 74/159 (46.54%), Query Frame = 3
Query:   75 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANETIKLD 551
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      +++ +D
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVD 158          
The following BLAST results are available for this feature:
BLAST of EY675933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULAC3.753e-1831.4130S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_NANEQ1.426e-1735.8430S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_METHJ1.207e-1629.1030S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_METS57.825e-1632.9330S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_NATPD9.565e-1429.9330S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALMA2.131e-1329.2530S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4_BIGNA3.635e-1324.7340S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_HALLT4.747e-1330.0730S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_THEAC8.097e-1328.8130S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_HALSA2.356e-1228.3030S ribosomal protein S4e OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-016-G03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675933 ID=EY675933; Name=EY675933; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGAAGAGAACAGACAAGCCCCCTTAGCGAGGCAGCAGCTTC
AAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAA
TGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTA
AGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTT
GTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGC
TATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATA
AGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAAC
GAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTC
CCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCC
AGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACC
ATCCGCTACCCTGACCCACTCATCAAAGCCAATGAAACCATCAAACTTGA
CTTAAAAAAGACAAGAACACTGACTTCCTCAATTTTGATGTTGGGAAATA
TTGTCAGGGTCACCGGGGGGTAAAACAAAAGGTCGGGGTTGGAATCCTCC
AAAAACGGGAAAAAACCAAAAGGAAATTTTTGAAAACCACCCCATTTCCA
AAAACCCCTTGGGCCATAAATTTGGCCACCCCTCCAAGGAAAAAGGTTTC
CCACCCTCGGGAAAGGGGGTTAAAAACACTGGGGGGTTCCCCTTTTCAAA
GGGGGAAGGGGGTTTTTAAATTTTTCCCCCATTTTTTGAAAAAAAACCCA
AAAAAAAAAAAAAGGGGGCCCCCCCCGCGCGCCGTCTTTAAAAATTTTTT
TTAAAAAA
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