EY675838

Overview
NameEY675838
Unique NameEY675838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY675838 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 47/137 (34.31%), Postives = 66/137 (48.18%), Query Frame = 3 
Query:   42 GGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTSXXXXXXXXXXXXXXXXXVSGQGFIARDMTFENTAGP----ANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTPDFIFGDAA 440
            G   RV+I +  GVY E V I  +   + L+G     T++T                  V  + F A  +T +NTA      +  QA+A+R  +D + FYSC F G+QDTL       F+++C I GT DFIFG  A
Sbjct:   90 GNKNRVIIKLAPGVYNEKVTIDIARPFITLLGQPGAETVLT-YHGTAAQYGTVESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGA 225
The following BLAST results are available for this feature:
BLAST of EY675838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PME50_ARATH4.133e-1134.31Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-015-F07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675838 ID=EY675838; Name=EY675838; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGAGGGTGTGGCTGCAGCTGTCAAACTAGGAGGTGGAAGT
AAAAGAGTTGTCATTTACGTTAAAAGGGGTGTGTATAGAGAGAATGTTGA
GATTAAGAGATCTATGAAGAACTTGATGTTAATTGGAGATGGGATCGATG
CAACGATTGTTACTAGTAACAAAAATGGGAAAGGGGGCACCACTACTTTC
CGCACAGCAACTTTTGCTGTTTCCGGCCAAGGCTTCATTGCTAGAGACAT
GACATTCGAGAACACGGCCGGACCGGCAAACCATCAAGCAGTAGCCCTTC
GGTCTGGCTCCGACTTCTCGGTCTTCTATAGCTGCAGCTTCAAAGGATAT
CAAGATACCTTATATGTCTACTCTCAACGCCAATTCTACCGCAACTGTGA
CATATATGGAACCCCAGACTTCATATTTGGGGACGCAGCAGTTGTTCTCC
CAAGCTGGCACATCTACATAAGAAAACCCACCGGGCGGCCAAAAGAACAC
TGTCCCACCACAGGGAAAAAAAAAACCTAACGAAAACCCAGGCCTCCTTG
TTCTATATTCTAGGGTTACGGCGGAGTCGGGGCAGGGATCTTTCAAAAGT
TTTTAGGGGGCGCCTGGGAACCATTTTCAAAAACCGGGGTTTAGGAATGG
GAAATCCAGGGGGGTGGTTTGTTCCCCCCGGGTGGGTTCCCGGGGGAGGG
GGGAGTTTTTCCTTTAAACCCCCCTTTATTTGGGGGGAAAAAAAGGAACC
TCCGAAACCCGGGGCCACGCCCCTTGGGGGGGGGGGGAAAAGGGGCCCCG
GGGTACATGTTTTAAACCGAGCCCCCCCGGGGGGGGGCCCGGGGGGAATT
TTCTGGGGTGGGGGGAAAC
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