EY675683

Overview
NameEY675683
Unique NameEY675683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y1617_SHELP (UPF0502 protein Shew_1617 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=Shew_1617 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.989e-13
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:  379 RLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            +L S E R++GCL+EK+ T+PE YPL+LN L +ACNQK++REPVMNLS+     +L +L
Sbjct:    2 KLTSHEARVIGCLLEKEKTTPEQYPLSLNGLTLACNQKSSREPVMNLSEADTQAALDSL 60          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y1867_SHEON (UPF0502 protein SO_1867 OS=Shewanella oneidensis GN=SO_1867 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.210e-13
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = 1
Query:  394 EIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            E R++GCL+EK+ T+PE YPL+LNAL +ACNQKT+REPV+ L++ QV  +L +L
Sbjct:    7 EARVIGCLLEKEVTTPEQYPLSLNALTLACNQKTSREPVLELTEAQVQDALDSL 60          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y1050_KLEP7 (UPF0502 protein KPN78578_10500 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=KPN78578_10500 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.210e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1
Query:  379 RLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            +L + E R++GCL+EKQ T+PE YPL++NA+V ACNQKT REPVM+LS+ +V   L  L
Sbjct:    4 QLTAHEARVIGCLLEKQVTTPEQYPLSVNAVVTACNQKTNREPVMSLSESEVQALLDTL 62          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y2282_SHEDO (UPF0502 protein Sden_2282 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=Sden_2282 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.804e-13
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  382 LNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            L   E R++GCL+EK+ T+P+ YPL+LNAL +ACNQK++REPVM+L++ QV  SL  L
Sbjct:    3 LTEFEARVIGCLLEKEVTTPDQYPLSLNALTLACNQKSSREPVMSLTESQVQASLDEL 60          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y1995_CITK8 (UPF0502 protein CKO_01995 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=CKO_01995 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.887e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  382 LNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            L +TE R++GCL+EKQ T+PE YPL++N +V A NQKT REPVMNLS+ +V + L  L
Sbjct:    5 LTATEARVIGCLLEKQVTTPEQYPLSVNGVVTASNQKTNREPVMNLSEHEVQEQLDNL 62          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y102_GEOBB (UPF0502 protein Gbem_0102 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=Gbem_0102 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.887e-13
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  373 EPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALK 558
            E  L+ TE+R+LG L+EK  T+PE YPL+LNALV ACNQK+ R+PV++L + QV ++L  L+
Sbjct:    2 EATLDGTELRVLGSLVEKDLTTPEYYPLSLNALVNACNQKSNRDPVLSLDESQVTRALDTLR 63          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: YCEH_SHIDS (UPF0502 protein yceH OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yceH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  379 RLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            +L + E R++GCL+EKQ T+PE YPL+ N +V ACNQK  REPVMNLS+ +V + L  L
Sbjct:    4 QLTALEARVIGCLLEKQVTTPEQYPLSANGVVTACNQKMNREPVMNLSESEVQEQLDNL 62          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: YCEH_SALAR (UPF0502 protein yceH OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=yceH PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  382 LNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            L +TE R++GCL+EKQ T+PE YPL+++ +V ACNQKT REPVMNL++  V + L  L
Sbjct:    5 LTATEARVIGCLLEKQVTTPEQYPLSVHGVVTACNQKTNREPVMNLTEQAVQEQLDNL 62          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y676_VIBC3 (UPF0502 protein VC0395_0676/VC395_A0574 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=VC0395_0676 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:  379 RLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPAL 555
            +L+  E R++GCLIEK+ T+P+ YPLTLN+L  ACNQK+ REPV+NLS+ +V  ++  L
Sbjct:    4 QLSPLEARVIGCLIEKEVTTPDHYPLTLNSLTTACNQKSNREPVLNLSEAEVQDTVEGL 62          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y4348_XANCB (UPF0502 protein xcc-b100_4348 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_4348 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  364 TSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGV 570
            T   P L++ + R+LGCLIEK+AT+P+ YPLT+NA  +A NQKT REPV+ L  G+V  +L  L+  G+
Sbjct:    4 TLPTPVLDTAQARVLGCLIEKEATTPDAYPLTVNAAQVAANQKTAREPVLTLQTGKVHHALRQLETLGL 72          
The following BLAST results are available for this feature:
BLAST of EY675683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
Y1617_SHELP3.989e-1355.93UPF0502 protein Shew_1617 OS=Shewanella loihica (s... [more]
Y1867_SHEON5.210e-1359.26UPF0502 protein SO_1867 OS=Shewanella oneidensis G... [more]
Y1050_KLEP75.210e-1357.63UPF0502 protein KPN78578_10500 OS=Klebsiella pneum... [more]
Y2282_SHEDO6.804e-1356.90UPF0502 protein Sden_2282 OS=Shewanella denitrific... [more]
Y1995_CITK88.887e-1358.62UPF0502 protein CKO_01995 OS=Citrobacter koseri (s... [more]
Y102_GEOBB8.887e-1354.84UPF0502 protein Gbem_0102 OS=Geobacter bemidjiensi... [more]
YCEH_SHIDS1.161e-1255.93UPF0502 protein yceH OS=Shigella dysenteriae serot... [more]
YCEH_SALAR1.161e-1256.90UPF0502 protein yceH OS=Salmonella arizonae (strai... [more]
Y676_VIBC31.161e-1254.24UPF0502 protein VC0395_0676/VC395_A0574 OS=Vibrio ... [more]
Y4348_XANCB1.161e-1250.72UPF0502 protein xcc-b100_4348 OS=Xanthomonas campe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-H03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675683 ID=EY675683; Name=EY675683; organism=Citrus sinensis; type=EST; length=968bp
ACCGGGCGGGTCACCGGTCGGGATTCCCGGGTCGACAGCGATCTGCACCT
GACGCACCAGCGCCCTCTTGAGCGGGTACAGGCGTGCTTGCAGGAAGGCG
TTCCCGTCGATGTTCTTGGCGGTGGCGTGGGCTTCGGCCTTGTTCAGCAC
ATCGCTCAGGGCGTTGAGCATTTGCTTCCAGACCGGGAGGGAAGCGGCGT
ACAGGGAAATAGTCATGACAGTCTCGACAGTTGTGGCAGGGTTTGAAACA
GCGGCGATTATAGACATGCCGGCCGCCAGCGCCGCTTGTCTTTTATTTTT
TCAGGATTAGGCTAGTGGGCTCACTGCATTAGGGAAAGCGCGATGACCAC
CGAGCACGACACCACTTCCGAAGAGCCGCGCCTGAACAGCACGGAAATCC
GCATCCTGGGCTGCCTGATCGAAAAGCAGGCTACCAGCCCTGAAACCTAC
CCGTTGACGCTCAACGCGCTGGTGATCGCCTGCAACCAGAAAACCACCCG
CGAACCGGTGATGAACCTCAGCCAGGGCCAGGTCGGGCAGAGCCTGCCGG
CCCTGAAAGGTCCCGGGGTTACCCCGGCGGGGATGGGGCACCCCCCCCAA
CGCCTGGGAACCTTCGGGGGGACAAGGCCCTTGGAACGGGGGGCCGGCCC
AGGGGAATTCTCAGGGGGGCTGTTTGTTCCTGGGGGGGGCCCCCAAAGGG
GTAAAAAAATACATGACCCCCCACCGGAACCCCTGCCCAAATTTTGAAAA
AAACCCGAAGAAAGTGGGGTGCTCCCAACTGGAAACACCCTAATTGGCCC
CTTGGGGGCGGGCTTTTTTTTGGGGGCCCCCTTCCACTCCGGGGCGAAAC
GGGGAAAAAATAACAGTACATAAACCACCCCCCCCTGGGGGGGAACCACA
CGGGGAGTTAATTATAAAACAGCCTCTCCTTGGGGCGGGAGCCCGGTGGG
GAAACCCCCCCGGGGAGG
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