EY675627

Overview
NameEY675627
Unique NameEY675627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.816e-23
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFD-----VDHD 351
            RLT  KG+HL+  A+   ++RG Q  LLGS  D  ++N+F  LA +    H   A + L YDE  +H + AG+D ILVPS FEPCGLTQL  ++YG++PVVR+ GGL DTV D     +DHD
Sbjct:  310 RLTEQKGLHLVLQALPALIERGFQFALLGSG-DAGMENEFRRLAEQ----HPTAAAVRLGYDEAFAHRLIAGSDLILVPSRFEPCGLTQLYGLKYGTLPVVRRVGGLVDTVADARLETLDHD 426          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_PELCD (Glycogen synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.045e-23
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFD 339
            RL   KG+ L++ A  + L RG Q+V+LGS        DF++   +L + H  +  + L +D+ L+ LIYAG+D  L+PS +EPCGL QL+A+RYGS+PVVRKTGGL DTVFD
Sbjct:  305 RLASQKGLDLVEQAWEQLLQRGVQLVILGSG-----DQDFMDRFAQLGAQHPTQTAVRLGFDDRLARLIYAGSDMFLMPSHYEPCGLGQLIALRYGSVPVVRKTGGLADTVFD 412          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_CHLCV (Glycogen synthase OS=Chlamydophila caviae GN=glgA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.045e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTV 333
            R+   KG   +K AI   ++ G  +V++G+  DP IQ  F NL   L +S     R+ L Y++PL+ L+Y  AD I +PS FEPCGLTQL+ MRYG++P+VR TGGL DTV
Sbjct:  302 RIVEQKGPEFMKAAILHAMENGYALVIVGTCYDPEIQRKFTNLQESLTTS--PNIRIILDYNDPLARLVYGAADMICIPSHFEPCGLTQLIGMRYGTVPLVRSTGGLADTV 410          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_MANSM (Glycogen synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.537e-22
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFD--VDHDKER 360
            RLT  KG+ L+  +    + +GGQ+ LLGS   P +++  + LA++    H     + + YDEPLSHL+ AG D ILVPS FEPCGLTQL  ++YG++P+VR+TGGL DTV D   ++ KER
Sbjct:  301 RLTEQKGVDLLIQSAENIIKQGGQLALLGSGA-PSLESALLGLAHK----HPKNIAVKIGYDEPLSHLMVAGGDVILVPSRFEPCGLTQLYGLKYGTLPLVRQTGGLADTVVDSTAENIKER 417          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIRD (Glycogen synthase 1 OS=Rhizobium radiobacter GN=glgA1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.537e-22
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDH 348
            RLT  KGI L+  A+   +  GG++V+LG A D  ++   +  A    S H  R  + + Y+EPLSHL+ AG D I++PS FEPCGLTQL A+RYG IPVV +TGGL DTV D +H
Sbjct:  299 RLTWQKGIDLMAEAVDEIVSLGGRLVVLG-AGDVALEGALLAAA----SRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANH 409          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA1_AGRT5 (Glycogen synthase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.537e-22
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDH 348
            RLT  KGI L+  A+   +  GG++V+LG A D  ++   +  A    S H  R  + + Y+EPLSHL+ AG D I++PS FEPCGLTQL A+RYG IPVV +TGGL DTV D +H
Sbjct:  299 RLTWQKGIDLMAEAVDEIVSLGGRLVVLG-AGDVALEGALLAAA----SRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANH 409          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_SALTI (Glycogen synthase OS=Salmonella typhi GN=glgA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.424e-22
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFD 339
            RLT+ KG+ L+  A+   L++GGQ+ LLG A DP +Q  F+  A E    H  +A + + Y E  SH I  GAD ILVPS FEPCGLTQL  ++YG++P+VR+TGGL DTV D
Sbjct:  300 RLTNQKGLDLVLEALPGLLEQGGQLALLG-AGDPVLQEGFLAAAAE----HPGQAGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_AERHH (Glycogen synthase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.472e-22
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERA 363
            RLT  KG+HL+   + + L    QVV++GS  DP +      LA +      DR     TYD+ L+HL+ AGADF L+PS+FEPCGL Q+ ++ YG++P+VR  GGL DTV D D D E+A
Sbjct:  308 RLTEQKGVHLLLPVLDKFLHHKVQVVIVGSG-DPSLAAQLQTLAQQF----PDRLAFINTYDDRLAHLVEAGADFFLMPSLFEPCGLNQMYSLAYGTLPLVRAVGGLKDTVVDWDADPEQA 423          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_RHOCS (Glycogen synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.628e-22
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDV 342
            RLTH KGI L+  A+ R L  GGQ+ +LG+      Q      A  +H  H  R  L   YDE LSH I AGAD +LVPS FEPCGLTQ+ A+RYG++P+V + GGL DTV DV
Sbjct:  320 RLTHQKGIDLVLEALPRLLALGGQLAILGTGDKVLEQA----AAAAMHD-HPGRVGLVRAYDEALSHRIQAGADVLLVPSRFEPCGLTQMYALRYGALPLVSRVGGLADTVTDV 428          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_SALTY (Glycogen synthase OS=Salmonella typhimurium GN=glgA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFD 339
            RLT+ KG+ L+  A+   L++GGQ+ LLG A DP +Q  F+  A E    H  +  + + Y E  SH I  GAD ILVPS FEPCGLTQL  ++YG++P+VR+TGGL DTV D
Sbjct:  300 RLTNQKGLDLVLEALPGLLEQGGQLALLG-AGDPVLQEGFLAAAAE----HPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
The following BLAST results are available for this feature:
BLAST of EY675627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
GLGA_LEPCP1.816e-2349.18Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]
GLGA_PELCD4.045e-2349.56Glycogen synthase OS=Pelobacter carbinolicus (stra... [more]
GLGA_CHLCV4.045e-2347.75Glycogen synthase OS=Chlamydophila caviae GN=glgA ... [more]
GLGA_MANSM1.537e-2247.54Glycogen synthase OS=Mannheimia succiniciproducens... [more]
GLGA1_RHIRD1.537e-2250.00Glycogen synthase 1 OS=Rhizobium radiobacter GN=gl... [more]
GLGA1_AGRT51.537e-2250.00Glycogen synthase 1 OS=Agrobacterium tumefaciens (... [more]
GLGA_SALTI3.424e-2251.33Glycogen synthase OS=Salmonella typhi GN=glgA PE=3... [more]
GLGA_AERHH4.472e-2246.28Glycogen synthase OS=Aeromonas hydrophila subsp. h... [more]
GLGA_RHOCS7.628e-2251.75Glycogen synthase OS=Rhodospirillum centenum (stra... [more]
GLGA_SALTY9.962e-2250.44Glycogen synthase OS=Salmonella typhimurium GN=glg... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-B04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675627 ID=EY675627; Name=EY675627; organism=Citrus sinensis; type=EST; length=936bp
CGCTTAACACATCCCAAAGGAATCCATCTCATCAAGCATGCAATTTGGCG
AACATTAGATCGCGGTGGTCAGGTTGTGTTGCTTGGTTCAGCTCCGGATC
CCCGAATCCAGAATGATTTTGTGAATTTAGCTAATGAGTTGCATTCTTCT
CATGCGGACCGCGCTCGTCTTTGTTTGACTTATGATGAGCCACTTTCCCA
CCTGATTTATGCTGGGGCCGATTTCATTCTAGTTCCTTCAATCTTTGAGC
CATGTGGACTGACACAACTTGTGGCTATGAGATATGGTTCAATACCAGTG
GTTCGGAAAACTGGAGGACTTTATGACACTGTATTTGATGTTGACCATGA
TAAAGAGAGAGCACAAGCCCTAGATCTTGAAACCAAATGGATTTAATTTT
GATGGAGCTGATATTGCTGGAGTCAATTTATGCTCTTAATAGGGCAATTT
CTGCTTTATTATGATGGTCGAGAGTGGGTTGGAAACTCCATTAATGCAGA
ACAGTGATGGAACAAGAACGGGTCTTGGAATCCCCCCTGCTCTTGACTAA
TATGGAAGCTTTTCCCGTGCACCCCGCAAGTGAAAAAAAAAATATTGATC
GGGGTGGAAAAAACCCCATGGCCACTCCTTTCCCCCTCCCAAGTTTTGGA
ACGGGTTCAAGGGGGAAAAATCTTTGGTTTTGAATATTTACCGCCCTTTT
ATATCACCCCAAATTTGGAATTAAAAAATTTTCCCCCACATTTGGGAATT
TTAAAAATTTTCCCCCCCAGGGGCCCGGGGAACGCTTTAAGAGGGGGGTT
CTCCACAATTTTTTCAGGGAGGGACAAAGAAATTATTAGGGCGCAGTTTT
TAAAATTTTTTTTTTTATTTTTTTTTAATCCGCGGTAGGACATACATGCG
CCCAATACGAGAAAAAAAAAAAACATAAAACTACCT
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