EY675624

Overview
NameEY675624
Unique NameEY675624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 375
            TF + FS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LK+ +   +  ++++E LR  GW VPA+T+  +A  I V+R++ R  F    AE L+ D
Sbjct:  312 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 440          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PT  + FS+ +SQ+I QYY  +R G+EGYR +     + A+ L + + +TG F I +    +P+V + LKD  N     +++A+ L+  GW VPAY +P +  +  + R V R D  + +      D+++ + E
Sbjct:  308 PTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEE 441          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG-VPLVAFSLKDNKRHDE----FEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 390
            TF+L FS+   Q+IAQYY  +R G  GY  + + C +  + + + L+K G F+++    G +P V +++  N   +     ++++E LR  GW V +Y++P+    + V RVVIR  FSR L+   V D+   +
Sbjct:  308 TFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAI 441          
The following BLAST results are available for this feature:
BLAST of EY675624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_SHIFL2.023e-1838.76Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI2.023e-1838.76Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL62.023e-1838.76Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO572.023e-1838.76Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL2.023e-1838.76Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI2.023e-1838.76Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL62.023e-1838.76Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO575.885e-1837.98Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_LISMO1.004e-1732.09Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
GADB_DICDI2.734e-1532.84Glutamate decarboxylase B OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675624 ID=EY675624; Name=EY675624; organism=Citrus sinensis; type=EST; length=863bp
CCCACCTTCACCCTCACTTTCTCTAAAGGTTCTAGCCAAGTAATTGCTCA
GTACTACCAACTAATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGG
AGAATTGTCACGAAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAACT
GGCCGCTTCAACATTGTGTCAAAGGACGAAGGGGTTCCGTTGGTGGCATT
TTCTCTCAAGGACAACAAACGCCACGATGAATTCGAAGTGGCCGAATTGC
TGCGCCGTTTTGGTTGGATTGTGCCAGCGTACACCATGCCCGCTGACGCT
CAGCACATCACCGTGCTACGTGTCGTCATCAGGGAAGACTTCTCTCGCAC
ACTTGCCGAGCGCCTTGTACTCGACATCACAAAAGTGCTTCATGAAGCTT
GATTCGCTTTCCTTCAAAAGTGCTTGTACCTGCTTCTGAACAGAATGGAA
GGAATGGGAAAAGAAAAATGAAATTGGAACTCAGAGGGGAGTTCACTACT
TTACTGGGAGGAAATTCGTCTCCAAAAAGGAAAGCCAATAAAAAGAAATA
AAATTTGGTTAAGAAACCCCCCCCCCCCCCCCCTTTCATTTTTTTGAAAA
TTGTAAAAATTAAACATTATATAATTGGAATATGGAAACACGGAGGGGGA
TACCCGGTGAGAAGAATTTTAGAAAGTTGGATGTTTTTTTACTGAAAACC
CTATGGTAACACGGTAAAAGAACCCATCTTCAACAAAAACGATGATAACC
CCGAACGAATTCATGTATGTACCCTCTGAGAGAACGCTAAACAACCATAA
GAAAAAGAGAGAAAAAAAAACAAAAGAAAACATAGAGGGGGCGGGGCGCC
AACGACAGAAAGA
back to top