EY675624

Overview
NameEY675624
Unique NameEY675624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 43/131 (32.82%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG-VPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITK 384
            PTF+L FS+   Q++ QYY  +R G  GY  V + C ++ + + + ++K G F+IV    G +P   + LK +   + + F++++ +R  GW + +YT+P +   I V RV+IR  FS  +A  L+ D  +
Sbjct:  309 PTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLP-NLPDIVVQRVLIRHGFSHDMAMLLIEDFNR 438          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 54/182 (29.67%), Postives = 80/182 (43.96%), Query Frame = 1
Query:    4 TFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMEN--------------------CHENAMVLKEGLEKTGRFNIV--------SKDEGVPLVAFSLKDNKRHDEFE------VAELLRRFGWIVPAYTMPA---DAQHITVLRVVIREDFSRTLAERLVLDITKVLHEA*FAFLQKCLYLLL 438
            TF L FS+   QV+ QY+  + LG  GYR   +N                    C E    + E +E       V        +   GVPLVAF L   K H+E+       ++ LLR  GWI+P Y +P     +    VLRVV R +    LA+ L++DI  +L +   ++ + C ++ L
Sbjct:  354 TFGLNFSRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSFELLNSSKLPGCFEIVSSIHESIENDSAPKSVKDYWEHPQAYKPGVPLVAFKL-SKKFHEEYPEVPQAILSSLLRGRGWIIPNYPLPKATDGSDEKEVLRVVFRSEMKLDLAQLLIVDIESILTKLIHSYEKVCHHIEL 534          
The following BLAST results are available for this feature:
BLAST of EY675624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GADA_DICDI1.500e-1332.82Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCE_YEAST2.395e-1129.67Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675624 ID=EY675624; Name=EY675624; organism=Citrus sinensis; type=EST; length=863bp
CCCACCTTCACCCTCACTTTCTCTAAAGGTTCTAGCCAAGTAATTGCTCA
GTACTACCAACTAATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGG
AGAATTGTCACGAAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAACT
GGCCGCTTCAACATTGTGTCAAAGGACGAAGGGGTTCCGTTGGTGGCATT
TTCTCTCAAGGACAACAAACGCCACGATGAATTCGAAGTGGCCGAATTGC
TGCGCCGTTTTGGTTGGATTGTGCCAGCGTACACCATGCCCGCTGACGCT
CAGCACATCACCGTGCTACGTGTCGTCATCAGGGAAGACTTCTCTCGCAC
ACTTGCCGAGCGCCTTGTACTCGACATCACAAAAGTGCTTCATGAAGCTT
GATTCGCTTTCCTTCAAAAGTGCTTGTACCTGCTTCTGAACAGAATGGAA
GGAATGGGAAAAGAAAAATGAAATTGGAACTCAGAGGGGAGTTCACTACT
TTACTGGGAGGAAATTCGTCTCCAAAAAGGAAAGCCAATAAAAAGAAATA
AAATTTGGTTAAGAAACCCCCCCCCCCCCCCCCTTTCATTTTTTTGAAAA
TTGTAAAAATTAAACATTATATAATTGGAATATGGAAACACGGAGGGGGA
TACCCGGTGAGAAGAATTTTAGAAAGTTGGATGTTTTTTTACTGAAAACC
CTATGGTAACACGGTAAAAGAACCCATCTTCAACAAAAACGATGATAACC
CCGAACGAATTCATGTATGTACCCTCTGAGAGAACGCTAAACAACCATAA
GAAAAAGAGAGAAAAAAAAACAAAAGAAAACATAGAGGGGGCGGGGCGCC
AACGACAGAAAGA
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