EY675621

Overview
NameEY675621
Unique NameEY675621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: DDH1_SCHPO (2-hydroxyacid dehydrogenase homolog 1 OS=Schizosaccharomyces pombe GN=SPAC186.07c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 60/154 (38.96%), Postives = 94/154 (61.04%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVW 482
            +L L R     + +V   ++N+ G+    +DL GKT+G +G GRIG L+ + LK  F C +L HD +K + +LEK  G +F E  + +L K D + ++ PLT  T  + D+  +A MKKGV I+N +RG ++DT+A+V A  SG + G + DV+
Sbjct:  113 LLSLNRKIHRAYVRVREDDFNLNGLL--GHDLHGKTIGLLGTGRIGGLVAKCLKLGFGCEVLAHD-IKPNKELEK-FGIQFVEQQE-VLAKADFLCLHCPLTPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKALVKAIESGQVGGCAMDVY 261          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDP 545
            +L   R        V  G+W      +   +L GKT G +G GR+G  + +R K    N+L +D      + E + G K   D DT+L   D++ V+ P T++T G+  K +  KMK GV++VN ARG I+D  A+ +A  +G +A  + DV+  +P   D+P   + N    P
Sbjct:  108 MLAAARKIPQADRSVKEGKWERK--KFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAE-QIGVKLV-DFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTP 277          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F   +LY+ R +   + E+   A+   DLDT+L + D + +  PLT++T  M  +D++AKMKK  +++N  RG ++D  A+++A  +G +     DV+  +P P   P   +PN
Sbjct:  111 VLATARRVVEVAERVKAGEWQGSIGADWFGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPVLYNAR-RTHEEAEQRFNAR-RCDLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSSPLLTLPN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.521e-19
Identity = 61/171 (35.67%), Postives = 90/171 (52.63%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  L    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V V  PLT++T  M   ++  KMKK  + +N  RG ++D  A++ A  SG +     DV+  +P  KD P   M N
Sbjct:  111 VLTTARRALEVAERVKAGEWTGSIGPDWFGCDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNAR-RHHSEAEERFNARYC-DLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+ GKT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++ E L+T+L + D V +  PLT++T  +  K    KMKK  + +N  RG ++D +A+++A   G +     DV+  +P P D P   M N
Sbjct:  111 VLSTARRVVEVAERVKAGEWTKSIGPDWFGVDVHGKTLGIVGMGRIGLALAQRAHFGFNMPILYNAR-RHHSEAEERFEARYCE-LETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKALIEALQKGEIHAAGLDVFEQEPLPVDSPLLTMSN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L L R        V  G+W      +   +L GKT+G +G GRIG  ++ R K F  +++ +D     P + KE   +      DL+T+L + DIV ++ PLT +TR +  +D    MK    IVN ARG I+D  A+  A   G +AG + DV+  +P P+  P   + N
Sbjct:  110 MLALARKIAIADRSVKEGKWEKN--RFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYD-----PYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEP-PEGSPLLELEN 273          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SALTY (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhimurium GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G +     DV+  +P   D P   M N
Sbjct:  111 MLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G +     DV+  +P   D P   M N
Sbjct:  111 MLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G +     DV+  +P   D P   M N
Sbjct:  111 MLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SALPC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi C (strain RKS4594) GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G +     DV+  +P   D P   M N
Sbjct:  111 MLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSN 279          
The following BLAST results are available for this feature:
BLAST of EY675621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
DDH1_SCHPO1.515e-1938.962-hydroxyacid dehydrogenase homolog 1 OS=Schizosac... [more]
SERA_ARCFU3.376e-1932.18D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
GHRB_SERP55.758e-1932.75Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
GHRB_ENTS87.521e-1935.67Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ENT381.675e-1833.92Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
SERA_METTH3.732e-1833.14D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
GHRB_SALTY3.732e-1834.50Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALTI3.732e-1834.50Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALSV3.732e-1834.50Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPC3.732e-1834.50Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675621 ID=EY675621; Name=EY675621; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGGAGCTTATGAGAATCCTCCTTCTTGTCCGTAATTTCTTA
CCTGGACACCATCAAGTTACCAGTGGGGAATGGAATGTTGCAGGTGTTGC
TTATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTG
GACGCATTGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGTAAT
CTCCTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGAC
TGGAGCAAAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACA
TAGTTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGAC
AAAGATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGC
TCGAGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTG
GACACCTTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCA
AAGGACCATCCCTGGCGTTACATGCCCAATCCAGGCAATGACCCCTCTTG
TTTCTGGGACCACTTTTATTCCCACCTACGCTATGGCTGCGGGGAATCAA
GGAATATCCTTGGACAGAAACCTCANGGGGAAAAAAAATTTCCTGGTTCA
AATTTACATATTGGAGGGCGGGGGAAACTGGGCCCCCCAATATCAAAAAA
TTTACAATTGTGGAAAAAACGAGTGTGTTGGGAATTAATTCTCCATGTTA
AAACAGGGAACTTTCAGAAATATAAGGGTCCACTGTTTTTTGGTACCCTT
CCGGGCCCTTAGGGGGAAAAAACGTTTATGATAAATTTTGTTGAAATCCA
CCCACTATTAAAACAAAGGGGAAATAATAGAAAACCCCCCACGAAAAAAG
GGAAAA
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