EY675621

Overview
NameEY675621
Unique NameEY675621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_ECO45 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.315e-18
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G +     DV+  +P   D P   M N
Sbjct:  111 VLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMAN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_ECO27 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.315e-18
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G +     DV+  +P   D P   M N
Sbjct:  111 VLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMAN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.315e-18
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G +     DV+  +P   D P   M N
Sbjct:  111 VLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMAN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.086e-17
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G +     DV+  +P   D P   M N
Sbjct:  111 VLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMAN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.418e-17
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKD 506
            I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D
Sbjct:  114 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRD 269          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 1.418e-17
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKD 506
            I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D
Sbjct:  114 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRD 269          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 1.418e-17
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKD 506
            I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D
Sbjct:  114 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRD 269          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: GHRB_SHIF8 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri serotype 5b (strain 8401) GN=ghrB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.418e-17
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HLAGYSGDVWNPQPAPKDHPWRYMPN 530
            +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G  H+AG   DV+  +P   D P   M N
Sbjct:  111 VLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHVAGL--DVFEQEPLSVDSPLLSMAN 279          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.852e-17
Identity = 57/176 (32.39%), Postives = 92/176 (52.27%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSC 551
            I+ L R        +  G+W      +   +L GK +G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ +    A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D   R + N  N  SC
Sbjct:  114 IMCLARQIPQAAASMKDGKWERK--KFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRD---RALVNHENVISC 281          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.419e-17
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKD 506
            I+ L R        +  G+W+     +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ +    A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D
Sbjct:  114 IMCLARQIPQATASMKDGKWDRK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPI-ISPEVAASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRD 269          
The following BLAST results are available for this feature:
BLAST of EY675621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
GHRB_ECO458.315e-1833.33Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO278.315e-1833.33Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO248.315e-1833.33Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_SHIBS1.086e-1733.33Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
SERA_PANTR1.418e-1732.92D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MACFA1.418e-1732.92D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN1.418e-1732.92D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
GHRB_SHIF81.418e-1734.68Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
SERA_BOVIN1.852e-1732.39D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_MOUSE2.419e-1732.92D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675621 ID=EY675621; Name=EY675621; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGGAGCTTATGAGAATCCTCCTTCTTGTCCGTAATTTCTTA
CCTGGACACCATCAAGTTACCAGTGGGGAATGGAATGTTGCAGGTGTTGC
TTATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTG
GACGCATTGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGTAAT
CTCCTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGAC
TGGAGCAAAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACA
TAGTTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGAC
AAAGATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGC
TCGAGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTG
GACACCTTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCA
AAGGACCATCCCTGGCGTTACATGCCCAATCCAGGCAATGACCCCTCTTG
TTTCTGGGACCACTTTTATTCCCACCTACGCTATGGCTGCGGGGAATCAA
GGAATATCCTTGGACAGAAACCTCANGGGGAAAAAAAATTTCCTGGTTCA
AATTTACATATTGGAGGGCGGGGGAAACTGGGCCCCCCAATATCAAAAAA
TTTACAATTGTGGAAAAAACGAGTGTGTTGGGAATTAATTCTCCATGTTA
AAACAGGGAACTTTCAGAAATATAAGGGTCCACTGTTTTTTGGTACCCTT
CCGGGCCCTTAGGGGGAAAAAACGTTTATGATAAATTTTGTTGAAATCCA
CCCACTATTAAAACAAAGGGGAAATAATAGAAAACCCCCCACGAAAAAAG
GGAAAA
back to top