EY675609 | Citrus Genome Database

Overview


Name	EY675609
Unique Name	EY675609
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1043

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2

Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2

Query:  347 MQIFVKTLNGKTITLEVESSDTIDNVKAKDQDKGGIPPGQA*GSYFAGK 493
            MQIFVKTL GKTITLEVE SDTI+NVKAK QDK GIPP Q     FAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 48

The following BLAST results are available for this feature:

BLAST of EY675609 vs. ExPASy Swiss-Prot

BLAST of EY675609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_HUMAN	3.491e-34	96.05	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]
UBIQ_HORSE	3.491e-34	96.05	Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2	[more]
UBIQ_GORGO	3.491e-34	96.05	Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S...	[more]
UBIQ_FELCA	3.491e-34	96.05	Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1	[more]
UBIQ_DROME	3.491e-34	96.05	Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1...	[more]
UBIQ_CRIGR	3.491e-34	96.05	Ubiquitin OS=Cricetulus griseus PE=3 SV=1	[more]
UBIQ_CHICK	3.491e-34	96.05	Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1	[more]
UBIQ_CERCA	3.491e-34	96.05	Ubiquitin OS=Ceratitis capitata PE=1 SV=1	[more]
UBIQ_CAVPO	3.491e-34	96.05	Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1	[more]
UBIQ_CANFA	3.491e-34	96.05	Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-012-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY675609 ID=EY675609; Name=EY675609; organism=Citrus sinensis; type=EST; length=1043bp
CCACGCGTCCGCCCACGCGTCCGCCCACCCCTTTGATTAAACCAATAAAA
AAAAAAAGAAAAAGAAACACCCCCATACTTAGTTTAGATACCAAGGCTCC
CAATCTCAGCCTTCCAACATGCAGATCTTTGTGAAAACTTTGACCGGCAA
GACCATCACTCTCGAGGTGGAGAGCTCCGACACGATCGACAACGTCAAGG
CTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGGCTGATC
TTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACAACAT
CCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGC
AGATCTTCGTCAAGACTCTGAACGGGAAGACAATCACCCTGGAGGTGGAG
AGCTCCGACACGATCGACAACGTGAAGGCGAAGGATCAGGACAAGGGAGG
GATCCCCCCCGGACAAGCATAAGGCTCATACTTCGCCGGCAAGACAACTG
GAGGACGGGCACACCCCTGGCCCAAATAAAAAACACAGAAAGGAAACCCA
CGCCCCACCTAGAGGTTGGGCCCGAAAGGGGAGGAAAGGCATATTTTCCC
TCTAAGAACTATAACGGGGGAATAACAATATACACTTGAAAGTTGGGAAA
GTATCTCAAAACAGATTATAAAAAACTATGAAAAGAGCAAAAGATTTAGG
GGAAAAAAGAGAGGGAAATGCCGCCACAGAATCAGAAGGAGGATTACCTA
ACATTGGTCGAGACGAGGAACATACAAGAAGAAGTAGATAGGGAGAAATA
ATGAAAAAGAATAAAATAATTAGAAATATGGAGGAAGTACACCCAACTAG
CTACAAATGAGATGAAACGTGGCAGGTTAAACAGTGATGGGAAGGGGGGT
TAGCAAATTTAGCAAAAAATGTATTACAATATTGTAAGGAGGATGGTATG
TGCCCCGACTGGTGGTAATGAGGTAGATGATAAAGTGGAAGTAAATGATA
AACTAAAAATTATAAATTAATCCAATTAAATAAATACANGTGT