EY675609

Overview
NameEY675609
Unique NameEY675609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.639e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 2 
Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
[Close]
BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.128e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 2 
Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
[Close]
BLAST of EY675609 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.252e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:  119 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 346
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103
The following BLAST results are available for this feature:
BLAST of EY675609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBL1_SCHPO8.639e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST2.128e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ANUB1_HUMAN9.252e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675609 ID=EY675609; Name=EY675609; organism=Citrus sinensis; type=EST; length=1043bp
CCACGCGTCCGCCCACGCGTCCGCCCACCCCTTTGATTAAACCAATAAAA
AAAAAAAGAAAAAGAAACACCCCCATACTTAGTTTAGATACCAAGGCTCC
CAATCTCAGCCTTCCAACATGCAGATCTTTGTGAAAACTTTGACCGGCAA
GACCATCACTCTCGAGGTGGAGAGCTCCGACACGATCGACAACGTCAAGG
CTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGGCTGATC
TTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACAACAT
CCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGC
AGATCTTCGTCAAGACTCTGAACGGGAAGACAATCACCCTGGAGGTGGAG
AGCTCCGACACGATCGACAACGTGAAGGCGAAGGATCAGGACAAGGGAGG
GATCCCCCCCGGACAAGCATAAGGCTCATACTTCGCCGGCAAGACAACTG
GAGGACGGGCACACCCCTGGCCCAAATAAAAAACACAGAAAGGAAACCCA
CGCCCCACCTAGAGGTTGGGCCCGAAAGGGGAGGAAAGGCATATTTTCCC
TCTAAGAACTATAACGGGGGAATAACAATATACACTTGAAAGTTGGGAAA
GTATCTCAAAACAGATTATAAAAAACTATGAAAAGAGCAAAAGATTTAGG
GGAAAAAAGAGAGGGAAATGCCGCCACAGAATCAGAAGGAGGATTACCTA
ACATTGGTCGAGACGAGGAACATACAAGAAGAAGTAGATAGGGAGAAATA
ATGAAAAAGAATAAAATAATTAGAAATATGGAGGAAGTACACCCAACTAG
CTACAAATGAGATGAAACGTGGCAGGTTAAACAGTGATGGGAAGGGGGGT
TAGCAAATTTAGCAAAAAATGTATTACAATATTGTAAGGAGGATGGTATG
TGCCCCGACTGGTGGTAATGAGGTAGATGATAAAGTGGAAGTAAATGATA
AACTAAAAATTATAAATTAATCCAATTAAATAAATACANGTGT
back to top