EY675563

Overview
NameEY675563
Unique NameEY675563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1059
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.534e-13
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPAR-CFYTYDAFIEAAKAFPAFGNL-EYTS*KKMNCWFF 368
            +C  G CCS FGWCG T DYC  G CQS C               G        + +  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG   + T+ K+    FF
Sbjct:   29 LCASGLCCSKFGWCGNTNDYCGPGNCQSQC--------------PGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFF 126          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.921e-13
Identity = 55/166 (33.13%), Postives = 76/166 (45.78%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGNGVNG-ADHLPTRKMFEDLLEYRNDKRCPAR-CFYTYDAFIEAAKAFPAFGNLEYTS*KKMNCWFFHLARTRDGPPRGEPLAFAGWLLVGGNXIFNKGSWVLASVRTTCDSRTYPCSKGK 530
            +C  G CCS FGWCG T +YC  G CQS C               G G +G    + +  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG     + +K     F LA+T      G P A  G    G   +  +GS           S  +PC+ G+
Sbjct:   33 LCASGLCCSKFGWCGNTNEYCGPGNCQSQC-------------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAF-LAQTSHETTGGWPTAPDGPYAWGYCFLREQGS----PGDYCTPSSQWPCAPGR 180          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.921e-13
Identity = 36/93 (38.71%), Postives = 43/93 (46.24%), Query Frame = 3
Query:   45 CPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFG 323
            CP   CCS  G+CGLT  YCC GC S C                          T  MFE +L  RN+  CP + FYTYDA+  A + +P FG
Sbjct:   35 CPNDLCCSSGGYCGLTVAYCCAGCVSQCRNCFF---------------------TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFG 106          
The following BLAST results are available for this feature:
BLAST of EY675563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CHI2_SOLTU4.534e-1338.39Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC5.921e-1333.13Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI8_POPTR5.921e-1338.71Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675563 ID=EY675563; Name=EY675563; organism=Citrus sinensis; type=EST; length=1059bp
CCACGCGTCCGGGCTCAGCACAGAACCCCCCTAGCTGCGTTGTGTGCCCA
GAAGGGGAGTGTTGTAGTCCATTTGGTTGGTGTGGCCTAACAACAGACTA
CTGTTGTGAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAAT
GTGATCCCGACGACGGGACGGCTGGCAATGGGGTGAACGGGGCAGATCAT
CTCCCCACAAGGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAA
ACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAG
CCAAAGCTTTTCCAGCCTTTGGTAATCTGGAATATACATCGTAAAAAAAA
ATGAACTGTTGGTTTTTCCACCTGGCCCGAACTCGCGATGGACCCCCCCG
CGGGGAGCCCCTTGCGTTTGCTGGATGGCTATTAGTGGGGGGAAACGANA
TCTTTAATAAGGGAAGTTGGGTGCTTGCGTCCGTCCGAACTACTTGTGAT
TCCCGAACATATCCATGTTCGAAGGGGAAATAACTAATGAGCCAAAAGTC
CAATTTCAACTCCACTTTGGAATTTGCAATTTTACTTAAAGGGGCCGGAA
AAAGCCTTTGGGGGGGTGGGACGTTGTTTGAAAAAAATCCCAAAAACTAA
CTTTGCCCCCTGAATTTCATTATCTTTTCTTTTTCAAGTTCATCACAAAT
TCGGGGGTTTTGGGGGAGGGACTGGCCCCCGCCCCCCCTAAATACCCCAC
CCGTGCCCACCCAAATTTTCTTTTATTCCAACAAAAAGGGGAAAAACACA
TCACACAAAAAAGAAGACGTTAAAACCCCGCGGCCGCGGGTTTTCCCGGG
ATATTACCGGTTTTAAACACCAAAATATATTTAAAAATCCAAAGGGGGGG
AAAAATTTTATAATTTGTGGGGGCATACATATGGGGGGGAAAGAGGCACG
CCGCTTAACACAGAAAAACCCCCTGAATTTTAGGGGAGTTCTTCTCTTTC
ATCCACCCTTTTTTCATAGTTGTGGGGGAGAACAAGTATTGTTGTTGGGG
AAGAAATAT
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