EY675498

Overview
NameEY675498
Unique NameEY675498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC1_DANRE (Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 2
Query:   11 GIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 289
            GI VE  VH+   FL + G RN RS  A+  M A V  G  ++ L+GV++L  +  +  + Y+F +   L ++G L+GLV LPV+LSL GPP+
Sbjct: 1080 GIGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDG-AISTLLGVLMLAGSEFDFIMRYFFAVLAILTLLGILNGLVLLPVLLSLMGPPA 1171          
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC1_CHICK (Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   11 GIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 283
            GI VE  VH+  AFL + G +N+R+  AL  M A V  G   T L+GV++L  +  +  V Y+F +   L I+G L+GLV LPV+LS FGP
Sbjct: 1090 GIGVEFTVHIALAFLTAIGDKNRRAVLALEHMFAPVLDGAVST-LLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1179          
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC1_MOUSE (Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   11 GIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 283
            GI VE  VH+  AFL + G +N R+  AL  M A V  G   T L+GV++L  +  +  V Y+F +   L ++G L+GLV LPV+LS FGP
Sbjct: 1077 GIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVST-LLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSFFGP 1166          
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC1_HUMAN (Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   11 GIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 283
            GI VE  VH+  AFL + G +N+R+  AL  M A V  G   T L+GV++L  +  +  V Y+F +   L I+G L+GLV LPV+LS FGP
Sbjct: 1091 GIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVST-LLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1180          
The following BLAST results are available for this feature:
BLAST of EY675498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PTC1_DANRE1.368e-1241.94Protein patched homolog 1 OS=Danio rerio GN=ptch1 ... [more]
PTC1_CHICK1.787e-1245.05Protein patched homolog 1 OS=Gallus gallus GN=PTCH... [more]
PTC1_MOUSE2.334e-1243.96Protein patched homolog 1 OS=Mus musculus GN=Ptch1... [more]
PTC1_HUMAN2.334e-1245.05Protein patched homolog 1 OS=Homo sapiens GN=PTCH1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-011-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675498 ID=EY675498; Name=EY675498; organism=Citrus sinensis; type=EST; length=578bp
CACGCGTCCGGGGATTGCTGTTGAGCCCCTTGTGCATCTAGTGCATGCTT
TTCTGGTAAGCCATGGCCCTCGGAACCAACGATCACAAAAGGCTCTGAGT
ACCATGGGAGCTTCCGTCTTCAGTGGAATTACACTCACAAAGCTTGTTGG
AGTAATCGTGCTTTGCTTCGCCAGATCAGAAATTTTTGTGGTTTATTACT
TCCAAATGTACCTGGCATTGGTTATTATTGGTTTCTTGCATGGACTTGTG
TTTCTACCAGTGATATTGAGTCTGTTCGGTCCTCCATCGAGGCATATAAT
CATCGAGAAACAGCAAGCAGATGAACCATCTACTTCATCAAACTTGAGCT
AATTGGTGTGAAAAAAGTATAGCACCCATTTTGGGGGGTTTGACTTCGTC
TCTTGGTTTTTCTTACTGTAATGCAAGTTAATTTGTTGGCCCCTAAATTC
TTTTAGTCAGTGCATGCTTTCTCGATTACTGTTTATTGGATGGCACGAAC
AAACAAGCTACCCAATTCTTTGTTGTAAATTTCACTGAAAAAAGCTTCAT
GTATTTTTGGCTCTAAAAAAAAAAAAAA
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