EY675396

Overview
NameEY675396
Unique NameEY675396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675396_ssr224 microsatellite EY675396_ssr224:224..235. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAF 364
            F  ++  TW+  H++   GG  IQL LD+ +G GF +K  YLFG  SM IK+VPGDSAGTVTAF
Sbjct:   32 FGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAF 95
[Close]
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.713e-12
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F  ++  TW+  H +Q+ GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY+
Sbjct:   34 FGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYL 99
[Close]
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.039e-12
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F  ++  TW+  H +Q  GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY+
Sbjct:   35 FGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYL 100
[Close]
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.339e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F +DF VTWS  H+     GR+  L LDQ SG  F+S + +LFG++ MKIKL+ G S GTV A+Y+
Sbjct:   37 FNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYM 102
The following BLAST results are available for this feature:
BLAST of EY675396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
XTHB_PHAAN3.609e-1254.69Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB4.713e-1251.52Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH8.039e-1251.52Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH10_ARATH2.339e-1150.00Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-A04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675396 ID=EY675396; Name=EY675396; organism=Citrus sinensis; type=EST; length=1017bp
CCCACGCGTCCGCCACACCTTTAAAAAAAGATCTCTTTCTAATTAGTAAC
AGATAATACCTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGA
AATGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTG
CGTTTTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGT
CCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTT
CTAGACCAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTT
CGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAA
CTGTCACTGCATTTTATGTGTGTTAGTTAACTGTGTATATTTAGCGTTTA
ATTTATTGTGCGATTCTCTGTTTCAAAAGTTGAAATTTTGGCACATGAAA
GGATACTAACTTTTAATTATTTTTATTTTGGTTTCTTAATTAATTTTTTC
AAAAATGAAATTCCACACCGAAAATGTGAGAAACAACCTTGATTTTGAAT
TCCTGGGGAAACCGAAAGGGGTCAGCCTTTCCACGGCCCCAACCAATAAT
TTTTGCAAATTGGAAAAAGGGAATAAAAAACAAAAGAGGGAACCCCTCTG
GTTTGACCCTGGCTTCCAAATTTTCACCTTTTTAACCCTTTTCTCCTGGG
AAACATCACCCTAATTTGTCTTTCATTAGAGGATTGAAGTGGGCCCTATC
AGGGGGTTTAAAAAAACCATGGGAAAAGGGGGCCACCTTTTCCAAAAGGA
AACAACACCCCATGGGGGGGTGGTTAACCCCCACGCCGTAGGGGGGAAAA
CAAAAAAACGAAGTGGGGCAAAAAAAAAAAAGGTGGGGTCCTCAAAAAAA
AAAAAATAAAGAATGGGGAAAAGCAAAACCACTCTCCCTTTTTTTTTTTT
ACATATATATTTTAATGACTAGAAAGCATTATTTTTTATATAAAAGTTGA
TAGAGGGGGGGTGGGAG
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