EY675359

Overview
NameEY675359
Unique NameEY675359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.982e-52
Identity = 116/214 (54.21%), Postives = 137/214 (64.02%), Query Frame = 3
Query:  213 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLDETCIKKIWLGGILTTNFFP 854
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P     ++               +   ++  GP  + TDP+YPGG+F  +G   +DPE F      ++ K GR+ +FS  +  F        +G + +NL  +L D       W      TNF P
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL-ADDPEAFA-ELKVKELKNGRLAMFS--MFGFFVQAIVTGKGPL-ENLADHLADPV-NNNAW---AYATNFVP 204          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.409e-48
Identity = 112/225 (49.78%), Postives = 143/225 (63.56%), Query Frame = 3
Query:  141 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLDET 803
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLG P     ++               +   ++  GP+ +  DPLYPG +F  +G   +DP+ F      ++ K GR+  FS  +  F        +G V +NL  +L + T
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSL-VHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGL-ADDPDTFA-ELKVKEIKNGRLASFS--MFGFFVQAIVTGKGPV-QNLDDHLANPT 238          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.354e-48
Identity = 109/212 (51.42%), Postives = 134/212 (63.21%), Query Frame = 3
Query:  165 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLD 797
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG P     ++               +   ++  GP+ +  DPLYPG +F  +G   +DP+ F      ++ K GR+ +FS     F        +G + +NL  +L D
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPAL-IHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGL-ADDPDTFA-ELKVKEIKNGRLAMFS--CFGFFVQAIVTGKGPI-QNLADHLAD 239          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.250e-46
Identity = 113/213 (53.05%), Postives = 131/213 (61.50%), Query Frame = 3
Query:   75 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFS 713
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLG P     ++               +   ++  GP  + TDPLYP G+F S+G    D E F      ++ K GR+ +FS
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSL-VHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGL-AEDTEAFA-ELKVKELKNGRLAMFS 226          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.938e-46
Identity = 107/227 (47.14%), Postives = 134/227 (59.03%), Query Frame = 3
Query:   42 ATSTIALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSK--XXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFS 713
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLG P                      E  R+  L   P V   + LYPGG +       +DP  F      ++ K GR+ +FS
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL---PGVGEGNDLYPGGQYFDPLGLADDPTTFA-ELKVKEIKNGRLAMFS 223          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.548e-46
Identity = 120/279 (43.01%), Postives = 150/279 (53.76%), Query Frame = 3
Query:   42 ATSTIALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTD------PLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLDETCIKKIWLGGILTTNFFP 854
            +T   A S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLG P                      + +  L EG  +   D       LYPGG +       +DP  F      ++ K GR+ +FS  +  F        +G + +NL  + LD+      W   +  T F P
Sbjct:    3 STIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF-------QVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFA-ELKVKEIKNGRLAMFS--MFGFFVQAIVTGKGPL-ENLFDH-LDDPVANNAW---VFATKFAP 266          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.081e-40
Identity = 105/215 (48.84%), Postives = 133/215 (61.86%), Query Frame = 3
Query:  180 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSK--XXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLDETCIK 812
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLG                        E  R     EG  +   D LYPGG F  +G   +DP+ F      ++ K GR+ +FS  L  F+  I +  +G V +NL  +L D T  K
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEG-FLDDLDTLYPGGPFDPLGL-ADDPDTFA-ELKVKEIKNGRLAMFS-CLGFFVQAIVT-GKGPV-QNLTDHLADPTVNK 241          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.747e-34
Identity = 88/192 (45.83%), Postives = 115/192 (59.90%), Query Frame = 3
Query:  144 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFS 713
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLG P     ++               +   ++  GP+ +  DPLYPG  F  +G   +DP+ F      ++ K GR+ +F+
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSL-IHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGL-ADDPDTFA-ELKVKEIKNGRLAMFA 232          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.392e-24
Identity = 85/223 (38.12%), Postives = 109/223 (48.88%), Query Frame = 3
Query:  153 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLD 797
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y GK  P                  E  R+T       + + D L+PGG F  +G    DPE  G     ++ K GR+ +F+  ++ F    +    G V +NL K+L D
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-INLVLAVVAEVVLLGGAEYYRITN-----GLDFEDKLHPGGPFDPLGL-AKDPEQ-GALLKVKEIKNGRLAMFA--MLGFFIQAYVTGEGPV-ENLAKHLSD 260          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.804e-15
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  189 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 443
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144          
The following BLAST results are available for this feature:
BLAST of EY675359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_CUCSA7.982e-5254.21Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE1.409e-4849.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO5.354e-4851.42Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.250e-4653.05Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC2.938e-4647.14Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU8.548e-4643.01Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE1.081e-4048.84Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.747e-3445.83Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH5.392e-2438.12Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_SOLLC7.804e-1546.51Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-E08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675359 ID=EY675359; Name=EY675359; organism=Citrus sinensis; type=EST; length=1019bp
CGAACACTAGAGCTCACTACAACTCCGATCATTGTAAAATGGCAACCTCG
ACCATCGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCC
TTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCG
GGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTC
AAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGA
GTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAG
AAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCC
ATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGG
AGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCA
GCGAGGGCGGGCTTGACTACTTGGGGAAACCCAAGCCTGATCCACGCTCA
AAGCATCTTGGCCATCTGGGCTTGCCCGGTGGGTCTTGATGGGAGCCGTT
GAGGGTTACAAAATTGCGGGAGGGCCCTTCGGTGAAATGGACTGACCCAT
TGTACCCAGGTGGGAACTTTTAATCCATTGGGTTTTGGCTGAATGACCCG
GAGGGTTTTGGCTGACCTCAAGGTTAAAGGAAAACAAAAAAGGGAAGGGT
GGGCTTGTTTTCCCAGGTTTTGGTTTCTTTCATTCCAGGGATTTTTTCCC
CGGCAAGGGGAACGGTATAAAAAAATTTGGGCAAAAACCTTTTGGATGAA
ACCTGTATAAAAAAAATATGGCTGGGGGGCATACTCACCACAAATTTTTT
TCCCCCCGAGAAAAGGGGACGTTGTGGGGGAGAGAAAAAAATTTTTTTTT
GTTTGTTTAGGTGTTTTCGTGGGGAAGAAATCAGAAGAAAAACAGCGTGT
TTGGGGGGGAAGGCCTCGCGAGGGGGAAACCATTTTTATATTAATTTTGT
GTGGGTGTGTGGTGGTGTG
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