EY675359

Overview
NameEY675359
Unique NameEY675359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.738e-14
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  150 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 443
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.738e-14
Identity = 69/209 (33.01%), Postives = 89/209 (42.58%), Query Frame = 3
Query:   39 MATSTIALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGF 659
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLG P P               +  E  R   + + P  K     YPGG F  +GF   DP  F
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRT--MEKDPEKK----KYPGGAFDPLGF-SKDPAKF 184          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 60/158 (37.97%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  381 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPKPDPRSKXXXXXXXXXXS*WEPLRVTKLREGPSVKWTDPLYPGGNF*SIGFWLNDPEGFG*PQG*RKTKKGRVGLFSQVLVSFIPGIFSPARGTV*KNLGKNLLDETCIKKIWLGGILTTNFFP 854
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLG P     ++               +   ++  GP  +  DPLYPG  F  +G   +DPE        ++ K GR+ +FS  +  F        +G + +NL  +L D       W      TNF P
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL-IHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGL-ADDPEAKA-ELKVKEIKNGRLAMFS--MFGFFVQAIVTGKGPI-ENLYDHLADPVA-NNAW---AYATNFVP 148          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.246e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  219 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 446
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 6.183e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  228 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 431
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
BLAST of EY675359 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.377e-11
Identity = 40/91 (43.96%), Postives = 49/91 (53.85%), Query Frame = 3
Query:  222 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGKPKP 488
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG+P P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQPVP 135          
The following BLAST results are available for this feature:
BLAST of EY675359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_PETHY1.738e-1443.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU1.738e-1433.01Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB22_PINSY6.606e-1437.97Chlorophyll a-b binding protein type 2 member 2 (F... [more]
LH18_EUGGR1.246e-1246.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB11_SOLLC1.377e-1143.96Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-E08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675359 ID=EY675359; Name=EY675359; organism=Citrus sinensis; type=EST; length=1019bp
CGAACACTAGAGCTCACTACAACTCCGATCATTGTAAAATGGCAACCTCG
ACCATCGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCC
TTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCG
GGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTC
AAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGA
GTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAG
AAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCC
ATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGG
AGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCA
GCGAGGGCGGGCTTGACTACTTGGGGAAACCCAAGCCTGATCCACGCTCA
AAGCATCTTGGCCATCTGGGCTTGCCCGGTGGGTCTTGATGGGAGCCGTT
GAGGGTTACAAAATTGCGGGAGGGCCCTTCGGTGAAATGGACTGACCCAT
TGTACCCAGGTGGGAACTTTTAATCCATTGGGTTTTGGCTGAATGACCCG
GAGGGTTTTGGCTGACCTCAAGGTTAAAGGAAAACAAAAAAGGGAAGGGT
GGGCTTGTTTTCCCAGGTTTTGGTTTCTTTCATTCCAGGGATTTTTTCCC
CGGCAAGGGGAACGGTATAAAAAAATTTGGGCAAAAACCTTTTGGATGAA
ACCTGTATAAAAAAAATATGGCTGGGGGGCATACTCACCACAAATTTTTT
TCCCCCCGAGAAAAGGGGACGTTGTGGGGGAGAGAAAAAAATTTTTTTTT
GTTTGTTTAGGTGTTTTCGTGGGGAAGAAATCAGAAGAAAAACAGCGTGT
TTGGGGGGGAAGGCCTCGCGAGGGGGAAACCATTTTTATATTAATTTTGT
GTGGGTGTGTGGTGGTGTG
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