EY675338

Overview
NameEY675338
Unique NameEY675338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675338 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.275e-11
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   22 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFNGALAAAAYHQYI 309
            EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L   P +G  +NPARSFG AV   +   + + WI+WVGP  G   A   ++Y+
Sbjct:  145 EIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234
[Close]
BLAST of EY675338 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.196e-11
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:    4 GSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFNGALAAAAYHQYIL 312
            G A+  E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARSFG AVI         HWIFWVGP  GA+ A+  + +IL
Sbjct:  139 GQAVAVELVLTLQLVLCVFASMDSRQTLGSPAAM------IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAV---HWIFWVGPLTGAVLASLIYNFIL 232
[Close]
BLAST of EY675338 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.196e-11
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:    4 GSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFNGALAAAAYHQYIL 312
            G A+  E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARSFG AVI         HWIFWVGP  GA+ A+  + +IL
Sbjct:  139 GQAVAVELVLTLQLVLCVFASMDGRQTLASPAAM------IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAV---HWIFWVGPLTGAVLASLIYNFIL 232
The following BLAST results are available for this feature:
BLAST of EY675338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TIP22_ORYSJ6.275e-1142.27Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
AQP6_RAT8.196e-1138.83Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP6_MOUSE8.196e-1138.83Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675338 ID=EY675338; Name=EY675338; organism=Citrus sinensis; type=EST; length=959bp
AAAGGATCAGCCTTGGGTGCCGAGATTATTGGTACCTTCGTGCTTGTTTA
CACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCACG
TGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCAC
TTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGAGCTT
TGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCATTGGA
TCTTCTGGGTTGGTCCTTTCAATGGAGCATTGGCTGCAGCGGCATACCAC
CAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGGGATCATTCCGCAG
CAACCCTTCAAACTAAGAAAGCAAATTATGATGAATATGAACCACCAACC
AGAATAGCTTTATTTATCTCTTTTTCCTTTCTCTCTTTCTGTTATTTTGT
TCGCTTGTGTCTATTATGAGATGATGTTTGCTATGATAATTATGAACCTT
TCTCTTTATTTTTTCCATTTCATATTTTTGATTGAGTAACAATAGCTTTG
TCTCCGTGAATCATTGGTAATGAAGTAATGGTGGATGTTTGTTTTTTTCC
TAAAAAAAAAAAAAAGGGCCGGCCCCTCTAAAGGAATCCAGCTTAATTTA
CCCTGCTTGCCAAGGCCATACCTCTCTCATAATGGACACCAAAATTCAAT
TCACGGGGGCGGCCTTTTAAAAAGTCCCGGGATGGGGAAAAACCTTGGGG
TTTACCCAAATTTAACCCCCCTTGCACCCAATTCCCCCCTTTTCCCCCAA
ATGGGGTATAAAAAAAAAAAAAGCCCCCCCCCCCATAACCCCCCTTTCCC
AAAAGTGTTTACCCCAACCCCGGTAGAAGGGTGGAAAGGGGGGACACCCC
CCTCGCGTGTGCGCGCGCCGCCTATTAATCACCCCGGAGGGGGGGGGTGG
GGGGGTGTG
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