EY675319

Overview
NameEY675319
Unique NameEY675319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1037
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.211e-48
Identity = 94/120 (78.33%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNPNL HAQSILAIWA QVVLMG +EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:  145 LGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.183e-48
Identity = 94/120 (78.33%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   87 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.183e-48
Identity = 94/120 (78.33%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  136 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.090e-47
Identity = 94/119 (78.99%), Postives = 98/119 (82.35%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 357
            LGNP+L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct:  143 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.729e-47
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQV+LMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  155 LGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.565e-47
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.565e-47
Identity = 90/120 (75.00%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQVVLMG +EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  148 LGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.565e-47
Identity = 91/120 (75.83%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.565e-47
Identity = 91/120 (75.83%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQV+LMG VEGYR+                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP  NNAWAYATNF PGK
Sbjct:  146 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.656e-47
Identity = 91/120 (75.83%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY675319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_LEMGI4.211e-4878.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA7.183e-4878.33Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA7.183e-4878.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_MAIZE2.090e-4778.99Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY2.729e-4776.67Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2G_SOLLC3.565e-4776.67Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC3.565e-4775.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP3.565e-4775.83Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_POLMU3.565e-4775.83Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB24_TOBAC4.656e-4775.83Chlorophyll a-b binding protein 40, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675319 ID=EY675319; Name=EY675319; organism=Citrus sinensis; type=EST; length=1037bp
CTTGGCAACCCCAACCTCACTCATGCTCAGAGCATTTTGGCTATCTGGGC
CTGCCAGGTCGTGCTTATGGGTTTTGTTGAAGGATACAGAATTGGTGGCG
GTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGAC
CCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAA
GGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTG
TTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTAAAGAAACTCATTGACTTTGATGGTGTCTTTTTCAGCTG
TAACATTATTCTATGTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGG
ACTTATTAGTAACTCTGTAATGTTACCCTTAAAAATGCTATGCTCCTGAT
CTTTTATTTCCATCAAAATTTCAAAAAAAAAAAAAAAAAAAGGGGCGGCC
CCCCCTAGAGGATCCCAGCCTTATCTACGCCTTGCAGGCGACGTCCATAG
CTCCTTCCTAAGTGGTCCCCCAAAATTCAATTCCCGGGCCCCTCTTTTTT
CCAACGTCCTTGGCCTGGGGAAAACCCTTGGGCTTACCCACACTTAAACC
CCCTTTGGCCCCAAATCCCCCCCCTTTTTCCCCCCGCGGGGCCATAAATA
ACCAAAAAAAGGCCCCCCCCCCCATCTCCCCCTTCCCCAACATTTTGTGC
CCCCCCCGGTAAAAGGGGGGAAAAGGGGGCCCCCCCCCCGCGGAAACGGG
CCGCCTTAAAGACCCCGGGGGGGGGGGTGGGGGGGGGGTATACGCCAAAA
CGCGGTGGGGGACCAGTCAATACCATTTTGCACGCGCCCCGCCCTCAATT
AGCCCCCCCCCCTCACCTTTTTTTTGCTTTTTTTGTCTTATCTCTTCTTT
TCTTTTTTTTTATTCGCCGCACCCAAATAATTTTTAT
back to top