EY675319

Overview
NameEY675319
Unique NameEY675319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1037
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.147e-45
Identity = 91/120 (75.83%), Postives = 97/120 (80.83%), Query Frame = 1 
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A PV NNAWAYATNFVPGK
Sbjct:  144 LGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.358e-45
Identity = 89/119 (74.79%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 357
            LGNP+L HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAWAYA    PG
Sbjct:  149 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.656e-44
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSIL+IWA QV+LMG VEGYR+                +FDPLGLA+DP++ AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  145 LGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.656e-44
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGNP+L HAQSILAIWACQV+LMG VEGYR+                +FDPLGLA+DP+ FAELKVKE KNGRLAMFSMFGFF+QAIVTGKGP+ENL DH+ DPV NNAW+YATNFVP K
Sbjct:  148 LGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.825e-44
Identity = 88/116 (75.86%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   13 NLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            +L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.825e-44
Identity = 88/116 (75.86%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   13 NLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            +L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.689e-44
Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   13 NLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            +L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.689e-44
Identity = 88/120 (73.33%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 LGNPNLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            LGN +L HAQSILAIWA QV+LMG VEGYRI                +FDPL LADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct:  126 LGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.818e-44
Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   13 NLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            +L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.818e-44
Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   13 NLTHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 360
            +L HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of EY675319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_SOYBN1.147e-4575.83Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2_PHYPA4.358e-4574.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR1.656e-4472.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP1.656e-4471.67Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2F_SOLLC2.825e-4475.86Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.825e-4475.86Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.689e-4475.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_SOYBN3.689e-4473.33Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2C_SOLLC4.818e-4475.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.818e-4475.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675319 ID=EY675319; Name=EY675319; organism=Citrus sinensis; type=EST; length=1037bp
CTTGGCAACCCCAACCTCACTCATGCTCAGAGCATTTTGGCTATCTGGGC
CTGCCAGGTCGTGCTTATGGGTTTTGTTGAAGGATACAGAATTGGTGGCG
GTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGAC
CCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAA
GGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTG
TTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTAAAGAAACTCATTGACTTTGATGGTGTCTTTTTCAGCTG
TAACATTATTCTATGTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGG
ACTTATTAGTAACTCTGTAATGTTACCCTTAAAAATGCTATGCTCCTGAT
CTTTTATTTCCATCAAAATTTCAAAAAAAAAAAAAAAAAAAGGGGCGGCC
CCCCCTAGAGGATCCCAGCCTTATCTACGCCTTGCAGGCGACGTCCATAG
CTCCTTCCTAAGTGGTCCCCCAAAATTCAATTCCCGGGCCCCTCTTTTTT
CCAACGTCCTTGGCCTGGGGAAAACCCTTGGGCTTACCCACACTTAAACC
CCCTTTGGCCCCAAATCCCCCCCCTTTTTCCCCCCGCGGGGCCATAAATA
ACCAAAAAAAGGCCCCCCCCCCCATCTCCCCCTTCCCCAACATTTTGTGC
CCCCCCCGGTAAAAGGGGGGAAAAGGGGGCCCCCCCCCCGCGGAAACGGG
CCGCCTTAAAGACCCCGGGGGGGGGGGTGGGGGGGGGGTATACGCCAAAA
CGCGGTGGGGGACCAGTCAATACCATTTTGCACGCGCCCCGCCCTCAATT
AGCCCCCCCCCCTCACCTTTTTTTTGCTTTTTTTGTCTTATCTCTTCTTT
TCTTTTTTTTTATTCGCCGCACCCAAATAATTTTTAT
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