EY675312

Overview
NameEY675312
Unique NameEY675312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.886e-25
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:   56 QKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            + G+   +A WFKAG  IFS+ GL YLGNP  I A +ILAIWAC+  LMG +E Y +GGG  G+ L PLYPG A+DP   AD+P+  AELK  E+ NGR
Sbjct:    5 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGR 103

HSP 2 Score: 24.2534 bits (51), Expect = 2.886e-25
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  104 LAMFSMFGFFVQAIVTGKGPIENLYDHLADPVA 136
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.096e-24
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL C  P + ++ G    +A WFKAG  IFS+ GL YLGNP  + A NI+A  A +  LMG +E Y + GG  G+ L PLYPG ++DP   AD+PD FAELK  E+ NGR
Sbjct:   91 RWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGR 206
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.096e-24
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKF 316
            R AML AL CVFP + ++ G+   +A WFKAG+ IF + GL YLGNP  + A +ILAIWAC+  LMG VE Y +GGG  G+ L  LYPGGA+DP   A++P+ F
Sbjct:  102 RWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.221e-23
Identity = 61/118 (51.69%), Postives = 75/118 (63.56%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQK-GLHLNKAA-WFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R  +L AL  V P + + + G+    AA WFKAG +IF D GL+YLGNP  I A NI+A  A +  LMG VE Y + GG  G+ L PLYPG A+DP   AD+PD FAELK  E+ NGR
Sbjct:  110 RCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGR 227

HSP 2 Score: 22.7126 bits (47), Expect = 4.221e-23
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLK 419
            LAM + LGF V AI   K P++
Sbjct:  228 LAMFACLGFFVQAIVTGKGPIE 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.211e-22
Identity = 58/117 (49.57%), Postives = 72/117 (61.54%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AM  AL C+FP + S  G    +A WFKAG  IFS+ GL YLGNP  + A +ILAIW  +  LMG VE Y I  G  G+   PLYP G++D    A++ + FAELK  EL NGR
Sbjct:  106 SRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGR 221

HSP 2 Score: 24.2534 bits (51), Expect = 1.211e-22
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRK 407
            LAM S+ GF V AI +RK
Sbjct:  222 LAMFSMFGFFVQAIVSRK 239
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.670e-22
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQ-KGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R A+L AL  + P + S   G+   +  WFKAG  IFS+ GL YLG+P  I A NI+A  A +  LMG +E Y + GG  G+ L PLYPG ++DP   AD+PD FAELK  E+ NGR
Sbjct:   93 RWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGR 209

HSP 2 Score: 23.0978 bits (48), Expect = 2.670e-22
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S  GF V AI   K P++   + + D
Sbjct:  210 LAMFSCFGFFVQAIVTGKGPIQNLADHLAD 239
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.382e-20
Identity = 57/119 (47.90%), Postives = 71/119 (59.66%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQ-KGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPG--KRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R A+L AL  + P + SQ  G+   +  WFKAG  IF+D GL+YLGN   I A +I+A  A +  LMG  E Y   GG+ G    L  LYPGG +DP   AD+PD FAELK  E+ NGR
Sbjct:   88 RWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 206

HSP 2 Score: 24.2534 bits (51), Expect = 1.382e-20
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S LGF V AI   K P++   + + D
Sbjct:  207 LAMFSCLGFFVQAIVTGKGPVQNLTDHLAD 236
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.335e-20
Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQ-KGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAY-DPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP +  +  G+   +  WFKAG+ IFS+ GL YLGNP  + A +ILA+   +  LMG VE + I G +     + LYPGG Y DP   AD+P  FAELK  E+ NGR
Sbjct:  104 RWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221

HSP 2 Score: 24.6386 bits (52), Expect = 2.335e-20
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K PL+   + + D  A
Sbjct:  222 LAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVA 254
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.471e-19
Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQ-KGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAY-DPGVFADNPDKFAELKDNELNNGR 352
            R AML AL C+FP +  +   +   +  WFKAG+ IFSD GL YLGNP  + A +ILA+   +  LMG VE + I G       + LYPGG Y DP   AD+P  FAELK  E+ NGR
Sbjct:  101 RWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGR 218

HSP 2 Score: 24.2534 bits (51), Expect = 1.471e-19
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLK 419
            LAM S+ GF V AI   K PL+
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLE 240
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.325e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  152 IQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220

HSP 2 Score: 25.7942 bits (55), Expect = 5.325e-15
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + I D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHIAD 250
The following BLAST results are available for this feature:
BLAST of EY675312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_PINSY2.886e-2555.56Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2_CHLRE1.096e-2450.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR1.096e-2453.85Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNSA4.221e-2351.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.211e-2249.57Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO2.670e-2248.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.382e-2047.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU2.335e-2048.31Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.471e-1947.46Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2F_SOLLC5.325e-1555.22Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675312 ID=EY675312; Name=EY675312; organism=Citrus sinensis; type=EST; length=1025bp
CACGCGTCCGGCCATGCTTGAAGCTCTCTTCTGCGTCTTCCCTGTAATCT
TCTCCCAAAAAGGACTCCACTTAAACAAAGCAGCTTGGTTCAAGGCTGGC
ACATCTATATTCTCTGACAGTGGCCTTCACTATCTAGGCAACCCCTAGCA
CATTCAAGCCTCCAACATTTTGGCTATCTGGGCCTGCCGGGATGAGCTTA
TGGGTTTTGTTGAATGATACTAAATTGGTGGCGGTAATCCTGGTAAACGA
CTTCACCCTCTTTACCCTGGTGGTGCTTATGACCCAGGTGTTTTCGCGGA
TAATCCCGATAAATTTGCTGAGTTGAAGGACAACGAGCTCAATAATGGCA
GATCTGGCTATGATCTCATTGTTAGGATTCCTTGTCCACGCAATTGACAA
TAGAAAGATACCATTAAAATGCGCGAGAGAACCCATTAAAGATACTGAGG
CCCAAGAATGCAAGTGCTAAAACTTTTAAAATAAATTCCAAGGAAGCTTA
GAAAACTTAAGAAATGAAAGTAGTCCTTTCTACATCTAAAAAAACTTAAT
CAAGATAACCTAAGAGGGCAATCAAAGTAAAGCCATAAACCTTGAATCAT
GTAAAAAAAACACGATAAGGGTAACGAATAAACAAGGTTATAGATACCAA
ATTATTTCCATTTACGAAAAATTGCAAAAAAATACAATTATAAAAAAAAA
TTAAGTAAAAAACTACCAAAAGGAAAAGTAAAATAAAATAAAGGAAAGAT
AAAAGAAAAAGATAAAAAAAGAAAAAAAAAAAAACAAGAGAGGGAGAGAG
CAGAGACTGAGCAAAGAAAAAAGAAAGTACAGAGAAAACAAAAAGAGTAA
AAAAAGAAAGTAAAGAAATATAAAGGAACTAGAGCACACAATAAAACAAA
ATGTAACAACATATAATCAAGCTTGTGAAACGAACAACCAAAGCATGAGG
AAGAAAATAGATATGGGACAAAAACGAGAAAATAAGAAGTCAAGAAATGA
TCAAATAGAATGATATTAGGATAAC
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