EY675312

Overview
NameEY675312
Unique NameEY675312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.325e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  152 IQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220          

HSP 2 Score: 25.7942 bits (55), Expect = 5.325e-15
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + I D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHIAD 250          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.995e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  152 IQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  152 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218          

HSP 2 Score: 25.0238 bits (53), Expect = 8.995e-15
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 248          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.995e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  152 IQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  152 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218          

HSP 2 Score: 25.0238 bits (53), Expect = 8.995e-15
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 248          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.659e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  152 IQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:    3 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 69          

HSP 2 Score: 25.0238 bits (53), Expect = 9.659e-15
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:   70 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 99          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.215e-13
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  125 LHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNP-GKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            L YLGNP  + A +ILAIWA +  LMG VE Y + G  P G+    LYPGG++DP     +P+ FAELK  E+ NGR
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGR 77          

HSP 2 Score: 25.0238 bits (53), Expect = 2.215e-13
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:   78 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 107          
The following BLAST results are available for this feature:
BLAST of EY675312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2E_SOLLC5.325e-1555.22Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2C_SOLLC8.995e-1555.22Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.995e-1555.22Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2D_SOLLC9.659e-1555.22Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_RAPSA2.215e-1350.65Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675312 ID=EY675312; Name=EY675312; organism=Citrus sinensis; type=EST; length=1025bp
CACGCGTCCGGCCATGCTTGAAGCTCTCTTCTGCGTCTTCCCTGTAATCT
TCTCCCAAAAAGGACTCCACTTAAACAAAGCAGCTTGGTTCAAGGCTGGC
ACATCTATATTCTCTGACAGTGGCCTTCACTATCTAGGCAACCCCTAGCA
CATTCAAGCCTCCAACATTTTGGCTATCTGGGCCTGCCGGGATGAGCTTA
TGGGTTTTGTTGAATGATACTAAATTGGTGGCGGTAATCCTGGTAAACGA
CTTCACCCTCTTTACCCTGGTGGTGCTTATGACCCAGGTGTTTTCGCGGA
TAATCCCGATAAATTTGCTGAGTTGAAGGACAACGAGCTCAATAATGGCA
GATCTGGCTATGATCTCATTGTTAGGATTCCTTGTCCACGCAATTGACAA
TAGAAAGATACCATTAAAATGCGCGAGAGAACCCATTAAAGATACTGAGG
CCCAAGAATGCAAGTGCTAAAACTTTTAAAATAAATTCCAAGGAAGCTTA
GAAAACTTAAGAAATGAAAGTAGTCCTTTCTACATCTAAAAAAACTTAAT
CAAGATAACCTAAGAGGGCAATCAAAGTAAAGCCATAAACCTTGAATCAT
GTAAAAAAAACACGATAAGGGTAACGAATAAACAAGGTTATAGATACCAA
ATTATTTCCATTTACGAAAAATTGCAAAAAAATACAATTATAAAAAAAAA
TTAAGTAAAAAACTACCAAAAGGAAAAGTAAAATAAAATAAAGGAAAGAT
AAAAGAAAAAGATAAAAAAAGAAAAAAAAAAAAACAAGAGAGGGAGAGAG
CAGAGACTGAGCAAAGAAAAAAGAAAGTACAGAGAAAACAAAAAGAGTAA
AAAAAGAAAGTAAAGAAATATAAAGGAACTAGAGCACACAATAAAACAAA
ATGTAACAACATATAATCAAGCTTGTGAAACGAACAACCAAAGCATGAGG
AAGAAAATAGATATGGGACAAAAACGAGAAAATAAGAAGTCAAGAAATGA
TCAAATAGAATGATATTAGGATAAC
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