EY675307

Overview
NameEY675307
Unique NameEY675307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675307_ssr34 microsatellite EY675307_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 133
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 130
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFK 134
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFK 130
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFK 130
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 132
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFK 128
[Close]
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFK 131
The following BLAST results are available for this feature:
BLAST of EY675307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB25_TOBAC4.481e-1853.41Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL4.481e-1853.41Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC4.481e-1853.41Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_SOYBN4.481e-1853.41Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_PETSP4.481e-1853.41Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_ORYSJ4.481e-1852.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.481e-1852.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC4.481e-1853.41Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ4.481e-1854.55Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU4.481e-1853.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675307 ID=EY675307; Name=EY675307; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGATTTCATTTCTCTAACCATAGAAGCAGCAGCAGCAACAC
TCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTG
GAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTTA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGGTTAATT
TGCATTTTTCCAGATCGTTGCTCCTTTATGTCGTGTATTTGCTTATGGTT
TTGTAATGTCCTGGTTTTGCAAACTGGAACTCTACTTCTTGATGGAAAAC
CTTTGAACACTTTCGGAAAAAACATCCCAATCACCCTTGGTTTTTGCTGT
CATTGGGAAAATTGGTCTTGAAGGGGGGGGCTAAAAATTAAAAAACCCCC
ACGGGGTTTGGATTTGGAGGACAAACCTTCCCCCCGGGGGGGCCATTTTA
ACCCCCTGGGATTTATAAAAGGGGTCCTCGAACCCATTTTCCTCTGTTTA
AAAAGTGAAGAGAAATCAAAAAAAGGGGAAAAATTGGCCATTTTTTGCCC
ACAGCTCTTGGTTTTTTTTTCCCCCCCCCCTTTTTAGTCCACGGGGGAGG
GAGGGGGCCGTTTTGTAAAAAAAACTTGGGTTCAAACCAACTCCTCTCAG
TGATAAATCTCTCTTTTGTTTCCGATCA
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