EY675307

Overview
NameEY675307
Unique NameEY675307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675307_ssr34 microsatellite EY675307_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 133          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 129          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 122          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.852e-18
Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFK 133          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.852e-18
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE   K G   G EAVWFK
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFK 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.703e-17
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  277 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE    +      E VWFK
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFK 123          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.703e-17
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.224e-17
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.224e-17
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFK 112          
The following BLAST results are available for this feature:
BLAST of EY675307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_TOBAC4.481e-1853.41Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ORYSJ4.481e-1854.55Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_MAIZE4.481e-1853.41Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA4.481e-1853.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP5.852e-1853.41Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_LEMGI5.852e-1854.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.703e-1749.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_NICPL1.703e-1752.27Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_POLMU2.224e-1753.41Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_SOYBN2.224e-1752.27Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675307 ID=EY675307; Name=EY675307; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGATTTCATTTCTCTAACCATAGAAGCAGCAGCAGCAACAC
TCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTG
GAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTTA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGGTTAATT
TGCATTTTTCCAGATCGTTGCTCCTTTATGTCGTGTATTTGCTTATGGTT
TTGTAATGTCCTGGTTTTGCAAACTGGAACTCTACTTCTTGATGGAAAAC
CTTTGAACACTTTCGGAAAAAACATCCCAATCACCCTTGGTTTTTGCTGT
CATTGGGAAAATTGGTCTTGAAGGGGGGGGCTAAAAATTAAAAAACCCCC
ACGGGGTTTGGATTTGGAGGACAAACCTTCCCCCCGGGGGGGCCATTTTA
ACCCCCTGGGATTTATAAAAGGGGTCCTCGAACCCATTTTCCTCTGTTTA
AAAAGTGAAGAGAAATCAAAAAAAGGGGAAAAATTGGCCATTTTTTGCCC
ACAGCTCTTGGTTTTTTTTTCCCCCCCCCCTTTTTAGTCCACGGGGGAGG
GAGGGGGCCGTTTTGTAAAAAAAACTTGGGTTCAAACCAACTCCTCTCAG
TGATAAATCTCTCTTTTGTTTCCGATCA
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