EY675307

Overview
NameEY675307
Unique NameEY675307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675307_ssr34 microsatellite EY675307_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.904e-17
Identity = 46/88 (52.27%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.793e-17
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFK 133          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.793e-17
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFK 133          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.954e-17
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.954e-17
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFK 104          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.954e-17
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.954e-17
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.471e-17
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFK 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.471e-17
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFK 133          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.471e-17
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFK 133          
The following BLAST results are available for this feature:
BLAST of EY675307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB25_PETSP2.904e-1752.27Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_WHEAT3.793e-1753.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH3.793e-1753.93Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP4.954e-1751.14Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC4.954e-1751.14Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC4.954e-1751.14Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC4.954e-1751.14Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOLLC6.471e-1751.14Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_ARATH6.471e-1751.14Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.471e-1751.14Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675307 ID=EY675307; Name=EY675307; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGATTTCATTTCTCTAACCATAGAAGCAGCAGCAGCAACAC
TCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTG
GAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTTA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGGTTAATT
TGCATTTTTCCAGATCGTTGCTCCTTTATGTCGTGTATTTGCTTATGGTT
TTGTAATGTCCTGGTTTTGCAAACTGGAACTCTACTTCTTGATGGAAAAC
CTTTGAACACTTTCGGAAAAAACATCCCAATCACCCTTGGTTTTTGCTGT
CATTGGGAAAATTGGTCTTGAAGGGGGGGGCTAAAAATTAAAAAACCCCC
ACGGGGTTTGGATTTGGAGGACAAACCTTCCCCCCGGGGGGGCCATTTTA
ACCCCCTGGGATTTATAAAAGGGGTCCTCGAACCCATTTTCCTCTGTTTA
AAAAGTGAAGAGAAATCAAAAAAAGGGGAAAAATTGGCCATTTTTTGCCC
ACAGCTCTTGGTTTTTTTTTCCCCCCCCCCTTTTTAGTCCACGGGGGAGG
GAGGGGGCCGTTTTGTAAAAAAAACTTGGGTTCAAACCAACTCCTCTCAG
TGATAAATCTCTCTTTTGTTTCCGATCA
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