EY675307

Overview
NameEY675307
Unique NameEY675307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675307_ssr34 microsatellite EY675307_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.451e-17
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 95          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.104e-16
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFK 135          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.104e-16
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.441e-16
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFK 134          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.910e-15
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  334 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE   + G   G EAVWFK
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFK 73          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.033e-14
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFK 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 38/70 (54.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  334 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE     G   G EAVWFK
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFK 136          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.813e-12
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  289 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFG 510
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIG 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.813e-12
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  289 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFG 510
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIG 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.674e-12
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  277 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFY-KFGANCGPEAVWFK 543
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE    + G   G  A+WFK
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFK 141          
The following BLAST results are available for this feature:
BLAST of EY675307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_PEA8.451e-1751.14Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA1.104e-1652.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL1.104e-1651.14Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_HORVU1.441e-1648.86Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_CUCSA7.910e-1555.71Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB48_MAIZE1.033e-1448.86Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO2.154e-1254.29Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB12_SOLLC2.813e-1247.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.813e-1247.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNSA3.674e-1243.33Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675307 ID=EY675307; Name=EY675307; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGATTTCATTTCTCTAACCATAGAAGCAGCAGCAGCAACAC
TCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTG
GAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTTA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGGTTAATT
TGCATTTTTCCAGATCGTTGCTCCTTTATGTCGTGTATTTGCTTATGGTT
TTGTAATGTCCTGGTTTTGCAAACTGGAACTCTACTTCTTGATGGAAAAC
CTTTGAACACTTTCGGAAAAAACATCCCAATCACCCTTGGTTTTTGCTGT
CATTGGGAAAATTGGTCTTGAAGGGGGGGGCTAAAAATTAAAAAACCCCC
ACGGGGTTTGGATTTGGAGGACAAACCTTCCCCCCGGGGGGGCCATTTTA
ACCCCCTGGGATTTATAAAAGGGGTCCTCGAACCCATTTTCCTCTGTTTA
AAAAGTGAAGAGAAATCAAAAAAAGGGGAAAAATTGGCCATTTTTTGCCC
ACAGCTCTTGGTTTTTTTTTCCCCCCCCCCTTTTTAGTCCACGGGGGAGG
GAGGGGGCCGTTTTGTAAAAAAAACTTGGGTTCAAACCAACTCCTCTCAG
TGATAAATCTCTCTTTTGTTTCCGATCA
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