EY656932 | Citrus Genome Database

Overview


Name	EY656932
Unique Name	EY656932
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	910

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.152e-33
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.423e-33
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 66.2402 bits (160), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.0846 bits (157), Expect = 2.665e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E+SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.665e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.250e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.0846 bits (157), Expect = 2.665e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E+SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.665e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY656932 vs. ExPASy Swiss-Prot

BLAST of EY656932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_ARATH	1.864e-33	96.05	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBIQ_COPCO	4.152e-33	94.74	Ubiquitin OS=Coprinus congregatus PE=1 SV=1	[more]
UBIQ_CHLRE	5.423e-33	94.74	Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=...	[more]
UBIQ_YEAST	9.250e-33	93.42	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	9.250e-33	93.42	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	9.250e-33	93.42	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_GEOCY	9.250e-33	93.42	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CRYNE	9.250e-33	93.42	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	9.250e-33	93.42	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBIQ_CAEEL	9.250e-33	93.42	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-060-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY656932 ID=EY656932; Name=EY656932; organism=Citrus sinensis; type=EST; length=910bp
ATTAAACCAATAAACCACCCTTTTGAGGGGAAAGATATTTAGTTTAGATA
GNGAGGCCCCCTTTGAGAGCCTTCCAACATGCAGATCTTTGTGAAAACTT
TGACCGGCAAGACCATCACTCTCGAGGTGGAGATCTCCGACACGATCGAC
AACGTCTAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCA
GCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGG
ATTACAACATCCGGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGC
GGCGGCATGCTGATCTTCGTCAAGACTCTGACCGGGAGGACGATCACCCT
GGAGGGGGAAAGCTCCGACACGATCAAAAACGTGAAGGGGAAGATCGCTG
GAAAGGAAGGGATCCGCCCGGAGGGGGAGAGGCTCTTCCTTCCCGGGCAG
GCACTGGGAGGAAGGCCGACCCCCGGACAATTATAACACTCCGAAAGGAA
CCCTTGCTCACCTTGGGATTCACCTGGGGGGGGGAAAGGAGATTTTCGGC
CGGAACTTAACCGGGAAAAAAACCCCCGGCAGGGGAGAGCGCCGAGACAG
AGGAACACAGAAAGCCAAAAAAAGGGAAAAGACGGGGATCCCCCAGAGAA
TGACGAGACACCCATCAGGGGGAGAAAATAAAGGAGAGCGAGACGCACGC
AGTAAAACCGTCAGGAGGGAGGCACGTCCCAAATTTCTTCACTACGAGGG
GGAGAGAGTAAAGAAAAATAAGGAAAAACGGAGTAGGTATATAAACGGGT
CTGAGAAAAAAAATTGGTTATAGGGCGAGAGGGTGATGTTAGGTTTAAAT
TGCGAGTTTGAGGGAGCTATCGGGACGTGTAGTCTCCATTCTTAAGATTG
TCAGAGACTT