EY656932 | Citrus Genome Database

Overview


Name	EY656932
Unique Name	EY656932
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	910

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV  KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.6994 bits (156), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITL+VE SDTIDNV  KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY656932 vs. ExPASy Swiss-Prot

BLAST of EY656932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_NEUCR	1.578e-32	93.42	Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1	[more]
UBIQ_MOUSE	1.578e-32	93.42	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	1.578e-32	93.42	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	1.578e-32	93.42	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	1.578e-32	93.42	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]
UBIQ_HUMAN	1.578e-32	93.42	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]
UBIQ_HORSE	1.578e-32	93.42	Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2	[more]
UBIQ_GORGO	1.578e-32	93.42	Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S...	[more]
UBIQ_FELCA	1.578e-32	93.42	Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1	[more]
UBIQ_EUPEU	1.578e-32	93.42	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-060-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY656932 ID=EY656932; Name=EY656932; organism=Citrus sinensis; type=EST; length=910bp
ATTAAACCAATAAACCACCCTTTTGAGGGGAAAGATATTTAGTTTAGATA
GNGAGGCCCCCTTTGAGAGCCTTCCAACATGCAGATCTTTGTGAAAACTT
TGACCGGCAAGACCATCACTCTCGAGGTGGAGATCTCCGACACGATCGAC
AACGTCTAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCA
GCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGG
ATTACAACATCCGGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGC
GGCGGCATGCTGATCTTCGTCAAGACTCTGACCGGGAGGACGATCACCCT
GGAGGGGGAAAGCTCCGACACGATCAAAAACGTGAAGGGGAAGATCGCTG
GAAAGGAAGGGATCCGCCCGGAGGGGGAGAGGCTCTTCCTTCCCGGGCAG
GCACTGGGAGGAAGGCCGACCCCCGGACAATTATAACACTCCGAAAGGAA
CCCTTGCTCACCTTGGGATTCACCTGGGGGGGGGAAAGGAGATTTTCGGC
CGGAACTTAACCGGGAAAAAAACCCCCGGCAGGGGAGAGCGCCGAGACAG
AGGAACACAGAAAGCCAAAAAAAGGGAAAAGACGGGGATCCCCCAGAGAA
TGACGAGACACCCATCAGGGGGAGAAAATAAAGGAGAGCGAGACGCACGC
AGTAAAACCGTCAGGAGGGAGGCACGTCCCAAATTTCTTCACTACGAGGG
GGAGAGAGTAAAGAAAAATAAGGAAAAACGGAGTAGGTATATAAACGGGT
CTGAGAAAAAAAATTGGTTATAGGGCGAGAGGGTGATGTTAGGTTTAAAT
TGCGAGTTTGAGGGAGCTATCGGGACGTGTAGTCTCCATTCTTAAGATTG
TCAGAGACTT