EY656932 | Citrus Genome Database

Overview


Name	EY656932
Unique Name	EY656932
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	910

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 4.495e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 4.495e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDT++NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.855 bits (159), Expect = 2.665e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDT++NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 2.665e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.061e-32
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTI LEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 7.582e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TI LE ESSDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 7.582e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY656932 vs. ExPASy Swiss-Prot

BLAST of EY656932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_DROME	1.578e-32	93.42	Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1...	[more]
UBIQ_CRIGR	1.578e-32	93.42	Ubiquitin OS=Cricetulus griseus PE=3 SV=1	[more]
UBIQ_CHICK	1.578e-32	93.42	Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1	[more]
UBIQ_CERCA	1.578e-32	93.42	Ubiquitin OS=Ceratitis capitata PE=1 SV=1	[more]
UBIQ_CAVPO	1.578e-32	93.42	Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1	[more]
UBIQ_CANFA	1.578e-32	93.42	Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1	[more]
UBIQ_CAMDR	1.578e-32	93.42	Ubiquitin OS=Camelus dromedarius PE=3 SV=2	[more]
UBIQ_BOVIN	1.578e-32	93.42	Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1	[more]
UBIQ_ACECL	1.578e-32	92.11	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	2.061e-32	93.42	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-060-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY656932 ID=EY656932; Name=EY656932; organism=Citrus sinensis; type=EST; length=910bp
ATTAAACCAATAAACCACCCTTTTGAGGGGAAAGATATTTAGTTTAGATA
GNGAGGCCCCCTTTGAGAGCCTTCCAACATGCAGATCTTTGTGAAAACTT
TGACCGGCAAGACCATCACTCTCGAGGTGGAGATCTCCGACACGATCGAC
AACGTCTAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCA
GCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGG
ATTACAACATCCGGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGC
GGCGGCATGCTGATCTTCGTCAAGACTCTGACCGGGAGGACGATCACCCT
GGAGGGGGAAAGCTCCGACACGATCAAAAACGTGAAGGGGAAGATCGCTG
GAAAGGAAGGGATCCGCCCGGAGGGGGAGAGGCTCTTCCTTCCCGGGCAG
GCACTGGGAGGAAGGCCGACCCCCGGACAATTATAACACTCCGAAAGGAA
CCCTTGCTCACCTTGGGATTCACCTGGGGGGGGGAAAGGAGATTTTCGGC
CGGAACTTAACCGGGAAAAAAACCCCCGGCAGGGGAGAGCGCCGAGACAG
AGGAACACAGAAAGCCAAAAAAAGGGAAAAGACGGGGATCCCCCAGAGAA
TGACGAGACACCCATCAGGGGGAGAAAATAAAGGAGAGCGAGACGCACGC
AGTAAAACCGTCAGGAGGGAGGCACGTCCCAAATTTCTTCACTACGAGGG
GGAGAGAGTAAAGAAAAATAAGGAAAAACGGAGTAGGTATATAAACGGGT
CTGAGAAAAAAAATTGGTTATAGGGCGAGAGGGTGATGTTAGGTTTAAAT
TGCGAGTTTGAGGGAGCTATCGGGACGTGTAGTCTCCATTCTTAAGATTG
TCAGAGACTT