EY656932 | Citrus Genome Database

Overview


Name	EY656932
Unique Name	EY656932
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	910

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.061e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITL+VE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 63.929 bits (154), Expect = 5.838e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITL+ E+SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 5.838e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.061e-32
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV  KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.691e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 64.3142 bits (155), Expect = 7.582e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 7.582e-11
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + + GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRMRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.515e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITL+VE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 63.1586 bits (152), Expect = 9.847e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITL+ E SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 9.847e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.515e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTI+NV  KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 2.051e-11
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.0238 bits (53), Expect = 2.051e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.591e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTI LEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 63.1586 bits (152), Expect = 7.582e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TI LE E+SDTI+NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 25.409 bits (54), Expect = 7.582e-11
Identity = 12/26 (46.15%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            EEGR   +YN  K +  HL + L GG
Sbjct:   51 EEGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.591e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SD+I+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.591e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SD+I+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.830e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SD I+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.336e-31
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITL+VE SD+IDNV  KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY656932 vs. ExPASy Swiss-Prot

BLAST of EY656932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_TETPY	2.061e-32	92.11	Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ...	[more]
UBIQ_ACACA	2.061e-32	93.42	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_SHEEP	2.691e-32	92.11	Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2	[more]
UBIQ_EIMBO	3.515e-32	92.11	Ubiquitin OS=Eimeria bovis PE=2 SV=1	[more]
UBIQ_AGLNE	3.515e-32	92.11	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_TRYBB	4.591e-32	92.11	Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1	[more]
UBIQ_STRPU	4.591e-32	92.11	Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV...	[more]
UBIQ_ENCCU	4.591e-32	92.11	Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074...	[more]
UBIQ_DICDI	7.830e-32	92.11	Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1...	[more]
UBIQ_PHYIN	1.336e-31	90.79	Ubiquitin OS=Phytophthora infestans PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-060-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY656932 ID=EY656932; Name=EY656932; organism=Citrus sinensis; type=EST; length=910bp
ATTAAACCAATAAACCACCCTTTTGAGGGGAAAGATATTTAGTTTAGATA
GNGAGGCCCCCTTTGAGAGCCTTCCAACATGCAGATCTTTGTGAAAACTT
TGACCGGCAAGACCATCACTCTCGAGGTGGAGATCTCCGACACGATCGAC
AACGTCTAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCA
GCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGG
ATTACAACATCCGGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGC
GGCGGCATGCTGATCTTCGTCAAGACTCTGACCGGGAGGACGATCACCCT
GGAGGGGGAAAGCTCCGACACGATCAAAAACGTGAAGGGGAAGATCGCTG
GAAAGGAAGGGATCCGCCCGGAGGGGGAGAGGCTCTTCCTTCCCGGGCAG
GCACTGGGAGGAAGGCCGACCCCCGGACAATTATAACACTCCGAAAGGAA
CCCTTGCTCACCTTGGGATTCACCTGGGGGGGGGAAAGGAGATTTTCGGC
CGGAACTTAACCGGGAAAAAAACCCCCGGCAGGGGAGAGCGCCGAGACAG
AGGAACACAGAAAGCCAAAAAAAGGGAAAAGACGGGGATCCCCCAGAGAA
TGACGAGACACCCATCAGGGGGAGAAAATAAAGGAGAGCGAGACGCACGC
AGTAAAACCGTCAGGAGGGAGGCACGTCCCAAATTTCTTCACTACGAGGG
GGAGAGAGTAAAGAAAAATAAGGAAAAACGGAGTAGGTATATAAACGGGT
CTGAGAAAAAAAATTGGTTATAGGGCGAGAGGGTGATGTTAGGTTTAAAT
TGCGAGTTTGAGGGAGCTATCGGGACGTGTAGTCTCCATTCTTAAGATTG
TCAGAGACTT