EY675199

Overview
NameEY675199
Unique NameEY675199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY675199 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.626e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   34 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 156
            MAR KQTARKSTG +APRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of EY675199 vs. ExPASy Swiss-Prot
Match: H3V1_DICDI (Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:   52 TARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 429
            T+   T    PR ++       + PTT     P + R   +    IR+ + S + +I +LP  RLVREI   F   LR    A+LA+Q   EAYL  L ED+ L A HA R TI   D+   +R R
Sbjct:  495 TSASITTPTTPRIRVQRTTTTPTTPTT-----PRKKRRRRLVASVIRRLRNSVDFMIPRLPLSRLVREIMCLFDDGLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSVDMYAWKRAR 615
The following BLAST results are available for this feature:
BLAST of EY675199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETBO8.626e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3V1_DICDI8.074e-1135.71Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-D11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675199 ID=EY675199; Name=EY675199; organism=Citrus sinensis; type=EST; length=950bp
GAAATTGAGTGGAACAGTTGAAGAAACTCAGAGATGGCCCGTACCAAGCA
AACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGCTA
CCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGCCT
CATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTACCA
GAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTC
GTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCA
GTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGA
GGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCA
AGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAACGTAA
TTGCTGCTTGCTTTCATTGAATGACTGGAAGGGAAGGGGGAGATTGAATG
TGTTAAATTTGTAAATGGGGGTTGGTGGGGGAGAAATAAGGGTGAGAATA
AGAAACGAAAAAGAAAAGCGGATAAGAGAAGCAACGCAAAATAGATGAAC
AAAAAGAGAGAAGAGAAAAAAAAAACAAAATAATAAGAAGGACCACAAAG
AGAAGGCGAGGAAAACCCGAAGAAGAAGGAGACACGATAAGGGAAGAAAA
CGAAGCAGAAACAAATAAGCGCACACAAAAAACGCAAAAAAAGACCAGCA
GAGGACCAACACAACACGAAATAAAACAGAAAAAGAAAAACAAAAAGAAA
CAGCAACAGGGACGAAGAAAGAAAAATCGAAACACAGAACCAGAAAGAAG
CAAAAGCAAAAGAGAGAAAGCATCCCATGCCAGGACAACAAAAGTCACAA
GACGACCGAACCACAAATTACNGCACAAAAGCAAATGAGAGAGGAGAGAC
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