EY675188

Overview
NameEY675188
Unique NameEY675188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length990
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.065e-65
Identity = 117/155 (75.48%), Postives = 130/155 (83.87%), Query Frame = 3
Query:   18 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 482
            GCVFPE+L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVLMG VEGY +                +FDPLGL DDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ DPV NNAWAYATNFVPGK
Sbjct:  110 GCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 6.495e-59
Identity = 109/158 (68.99%), Postives = 127/158 (80.38%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 476
            MLGA GC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  NNA+A+AT F P
Sbjct:   94 MLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 8.483e-59
Identity = 115/161 (71.43%), Postives = 127/161 (78.88%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 479
            MLGA GCVFPE+L K  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG
Sbjct:  107 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.225e-57
Identity = 114/161 (70.81%), Postives = 125/161 (77.64%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 479
            MLGA GC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:  104 MLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.431e-55
Identity = 110/159 (69.18%), Postives = 123/159 (77.36%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 476
            +LGA G + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  NNA+A AT F P
Sbjct:   96 LLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.391e-53
Identity = 106/160 (66.25%), Postives = 125/160 (78.12%), Query Frame = 3
Query:    3 MLGAPGCVFPEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 476
            +LGA G V PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F P
Sbjct:  113 LLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.713e-51
Identity = 106/159 (66.67%), Postives = 119/159 (74.84%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 479
            M  A GC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V NNA +  TNFVPG
Sbjct:  110 MSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.231e-50
Identity = 104/162 (64.20%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 479
            +LGA G + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F PG
Sbjct:   91 LLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.189e-44
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  135 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 482
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.189e-44
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  135 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 482
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY675188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB48_MAIZE6.065e-6575.48Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_CHLRE6.495e-5968.99Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU8.483e-5971.43Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.225e-5770.81Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO7.431e-5569.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA2.391e-5366.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.713e-5166.67Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE3.231e-5064.20Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2F_SOLLC1.189e-4475.86Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.189e-4475.86Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675188 ID=EY675188; Name=EY675188; organism=Citrus sinensis; type=EST; length=990bp
CAATGCTTGGAGCTCCTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAAT
GGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATT
CTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTC
AGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTT
GAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACT
TTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATC
AATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATG
TTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCC
AATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCT
GGGCTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTT
GATGGTGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTT
TGGGGAAAACTCTGTCATGGACTTATTATTAACTCTGTAATGTTACCATT
AAAAATGCTATGCTCCTGATCTTTTAATTTCCNNANAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAANAAAAAAAAAAAAAAAAAAAAAA
AAGAAAAAAGAAAAAAGAAAATATTTATATAATTTATGGGGGGGGGCCCC
CCCTAAAAAAAAAACAAAACTATACAAACCCGGTGTGGGCGCAAACCCCA
AACCCTCTTTCATAAAAGGGCCCCACAAAAATTTTAATTTTCGGGGGCGG
CCGCTTTTTTTTAAACACCACCGTGGGGGGGGGGAGGAAAAAAACACCCG
GGGGGTTTTTCCACACAAAATATATATCCCCCCCCCTGGTCGCAGCCAAC
CACACACTCCCCCCCCCTTTTTTTTTTTCTCCCCCCCCGG
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