EY675188

Overview
NameEY675188
Unique NameEY675188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length990
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.881e-16
Identity = 59/150 (39.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 446
            ML  PG + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   95 MLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.037e-13
Identity = 52/151 (34.44%), Postives = 71/151 (47.02%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 434
            MLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct:  115 MLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.200e-12
Identity = 53/151 (35.10%), Postives = 70/151 (46.36%), Query Frame = 3
Query:    3 MLGAPGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 434
            MLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct:  115 MLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.568e-12
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   75 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 437
            W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of EY675188 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.957e-12
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   75 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 437
            W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
The following BLAST results are available for this feature:
BLAST of EY675188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB121_HORVU8.881e-1639.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC7.037e-1334.44Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.200e-1235.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_ARATH1.568e-1236.36Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.957e-1236.36Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675188 ID=EY675188; Name=EY675188; organism=Citrus sinensis; type=EST; length=990bp
CAATGCTTGGAGCTCCTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAAT
GGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATT
CTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTC
AGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTT
GAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACT
TTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATC
AATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATG
TTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCC
AATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCT
GGGCTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTT
GATGGTGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTT
TGGGGAAAACTCTGTCATGGACTTATTATTAACTCTGTAATGTTACCATT
AAAAATGCTATGCTCCTGATCTTTTAATTTCCNNANAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAANAAAAAAAAAAAAAAAAAAAAAA
AAGAAAAAAGAAAAAAGAAAATATTTATATAATTTATGGGGGGGGGCCCC
CCCTAAAAAAAAAACAAAACTATACAAACCCGGTGTGGGCGCAAACCCCA
AACCCTCTTTCATAAAAGGGCCCCACAAAAATTTTAATTTTCGGGGGCGG
CCGCTTTTTTTTAAACACCACCGTGGGGGGGGGGAGGAAAAAAACACCCG
GGGGGTTTTTCCACACAAAATATATATCCCCCCCCCTGGTCGCAGCCAAC
CACACACTCCCCCCCCCTTTTTTTTTTTCTCCCCCCCCGG
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