EY675185

Overview
NameEY675185
Unique NameEY675185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1013
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.630e-74
Identity = 144/206 (69.90%), Postives = 157/206 (76.21%), Query Frame = 3
Query:    3 TRPVKSAPHSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            T P   +  S WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+  AELKVKELKNG    +  +   FVQAIVTGKG +ENL
Sbjct:   37 TAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLA-MFSMFGFFVQAIVTGKGPLENL 233          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.134e-73
Identity = 140/200 (70.00%), Postives = 154/200 (77.00%), Query Frame = 3
Query:   27 HSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            + +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:   47 NDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 245          

HSP 2 Score: 23.483 bits (49), Expect = 1.134e-73
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  629 HIADPGANNAW 661
            H+ DP ANNAW
Sbjct:  248 HLDDPVANNAW 258          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 4.766e-73
Identity = 140/201 (69.65%), Postives = 153/201 (76.12%), Query Frame = 3
Query:   27 HSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENLL 623
            + +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNG    +  +   FVQAIVTGKG +ENLL
Sbjct:   44 NDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENLL 243          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.811e-72
Identity = 141/211 (66.82%), Postives = 158/211 (74.88%), Query Frame = 3
Query:    3 TRPVKSAPHSI----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            T+  K+AP       WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNG    +      FVQAIVTGKG I+NL
Sbjct:   24 TKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLA-MFSCFGFFVQAIVTGKGPIQNL 233          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.089e-72
Identity = 133/196 (67.86%), Postives = 156/196 (79.59%), Query Frame = 3
Query:   36 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNG       +   FVQAIVTGKG ++NL
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLA-SFSMFGFFVQAIVTGKGPVQNL 230          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.257e-65
Identity = 131/190 (68.95%), Postives = 145/190 (76.32%), Query Frame = 3
Query:   51 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D + FAELKVKELKNG    +  +   FVQAIV+ K  +ENL
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLA-MFSMFGFFVQAIVSRKDRLENL 245          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.257e-65
Identity = 130/199 (65.33%), Postives = 151/199 (75.88%), Query Frame = 3
Query:   36 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDPD FAELKVKE+KNG    +   L  FVQAIVTGKG ++NL
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLA-MFSCLGFFVQAIVTGKGPVQNL 230          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.488e-58
Identity = 122/197 (61.93%), Postives = 142/197 (72.08%), Query Frame = 3
Query:   36 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+ A+WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDPD FAELKVKE+KNG    +   L  FVQAIVTGKG IENL
Sbjct:   57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLA-MFACLGFFVQAIVTGKGPIENL 251          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.233e-44
Identity = 91/128 (71.09%), Postives = 98/128 (76.56%), Query Frame = 3
Query:  237 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP+  AELKVKE+KNG    +  +   FVQAIVTGKG IENL
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPIENL 127          

HSP 2 Score: 25.7942 bits (55), Expect = 1.233e-44
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  629 HIADPGANNAW 661
            H+ADP ANNAW
Sbjct:  130 HLADPVANNAW 140          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.226e-36
Identity = 94/201 (46.77%), Postives = 116/201 (57.71%), Query Frame = 3
Query:   36 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENLLR 626
            WYGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNG    +  +L  F+QA VTG+G +ENL +
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRI--TNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLA-MFAMLGFFIQAYVTGEGPVENLAK 256          
The following BLAST results are available for this feature:
BLAST of EY675185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB22_SOYBN5.630e-7469.90Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_HORVU1.134e-7370.00Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC4.766e-7369.65Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO1.811e-7266.82Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE3.089e-7267.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.257e-6568.95Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE1.257e-6565.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.488e-5861.93Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.233e-4471.09Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.226e-3646.77Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675185 ID=EY675185; Name=EY675185; organism=Citrus sinensis; type=EST; length=1013bp
CCACGCGTCCGGTCAAATCCGCTCCCCACAGCATCTGGTACGGCCCAGAC
CGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGAC
TGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAG
ACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGA
TGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAA
GAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAA
TATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCAT
GCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTT
TGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACC
CACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCC
GATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGGCCGTCTGG
CTATGTTCTCCATGTTTTGGATTCTTTTGTTCAGGCTATTGTCACTGGGA
AGGGGTCAATTGAAAACCTCCTACGACCCACATTGCTGATCCTGGGGCCA
ACAATGCCTGGGGCCTTATCCCCCTAACTTTTGTTTCCCGGAAAAATAAA
AAAAAACCCCATGATTTGGAATGGGGGCCTTTTTTCCGCCTGTAACTTTA
TTCTATGGTTCCATAGGGGGTTTTTGGGGAAAACTCGTGCCGGGGAATGT
TTTTAAATACCTCCTGATGGGTTACCCTTTGAAAAGGGCTACGCCTCCGG
AATTTTTTTATTTTATAAAAAAAAAAAAAAAAAGAGGGGGGGGCCCCCCC
CTAAAAAGAGAGACACAAATTATAAAATAAACCGCAGTGGGACGAGGAAA
AAGAACACAATAAACAACCCCTCCTCGAAATAAAGGGGGGGCCACCCGCC
TATGATATTTTCC
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