EY675185

Overview
NameEY675185
Unique NameEY675185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1013
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.008e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  339 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 244          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.008e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  339 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 244          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.008e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  339 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 93          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.008e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  339 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.008e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  339 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.932e-22
Identity = 58/102 (56.86%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  318 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNG    +  +   FVQAIVTGKG +ENL
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLA-MFSMFGFFVQAIVTGKGPLENL 101          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.584e-20
Identity = 69/199 (34.67%), Postives = 94/199 (47.24%), Query Frame = 3
Query:   45 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNG    +L V+ ++ Q I TG G I+NL
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA-MLAVMGAWFQHIYTGTGPIDNL 251          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.681e-20
Identity = 67/199 (33.67%), Postives = 96/199 (48.24%), Query Frame = 3
Query:   45 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNG    +L V+ ++ Q I TG G I+NL
Sbjct:   63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA-MLAVMGAWFQHIYTGTGPIDNL 251          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.984e-20
Identity = 67/179 (37.43%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   87 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNG    +  V     Q+   G G +ENL
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENL 222          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.323e-19
Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   87 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENL 620
            P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNG    +  V     Q+   G G +ENL
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENL 221          
The following BLAST results are available for this feature:
BLAST of EY675185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB2F_SOLLC1.008e-2260.64Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.008e-2260.64Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.008e-2260.64Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.008e-2260.64Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.008e-2260.64Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.932e-2256.86Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_PETHY3.584e-2034.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.681e-2033.67Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC7.984e-2037.43Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU2.323e-1935.75Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675185 ID=EY675185; Name=EY675185; organism=Citrus sinensis; type=EST; length=1013bp
CCACGCGTCCGGTCAAATCCGCTCCCCACAGCATCTGGTACGGCCCAGAC
CGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGAC
TGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAG
ACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGA
TGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAA
GAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAA
TATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCAT
GCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTT
TGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACC
CACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCC
GATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGGCCGTCTGG
CTATGTTCTCCATGTTTTGGATTCTTTTGTTCAGGCTATTGTCACTGGGA
AGGGGTCAATTGAAAACCTCCTACGACCCACATTGCTGATCCTGGGGCCA
ACAATGCCTGGGGCCTTATCCCCCTAACTTTTGTTTCCCGGAAAAATAAA
AAAAAACCCCATGATTTGGAATGGGGGCCTTTTTTCCGCCTGTAACTTTA
TTCTATGGTTCCATAGGGGGTTTTTGGGGAAAACTCGTGCCGGGGAATGT
TTTTAAATACCTCCTGATGGGTTACCCTTTGAAAAGGGCTACGCCTCCGG
AATTTTTTTATTTTATAAAAAAAAAAAAAAAAAGAGGGGGGGGCCCCCCC
CTAAAAAGAGAGACACAAATTATAAAATAAACCGCAGTGGGACGAGGAAA
AAGAACACAATAAACAACCCCTCCTCGAAATAAAGGGGGGGCCACCCGCC
TATGATATTTTCC
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