EY675185

Overview
NameEY675185
Unique NameEY675185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1013
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.354e-18
Identity = 81/232 (34.91%), Postives = 107/232 (46.12%), Query Frame = 3
Query:    3 TRPVKSAPHSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENLL 623
            T PVK        G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNG    +L +L  F+Q +VTG G  +NLL
Sbjct:   45 TPPVKQG------GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA-MLAILGYFIQGLVTGVGPYQNLL 257          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.760e-18
Identity = 79/233 (33.91%), Postives = 107/233 (45.92%), Query Frame = 3
Query:    3 TRPVKS-APHSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENLL 623
            T PVK  A   +W+           S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNG    +L +L  F+QA+VTG G  +NLL
Sbjct:   44 TPPVKQGANRQLWFA----------SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLA-MLAILGYFIQALVTGVGPYQNLL 255          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.193e-15
Identity = 51/97 (52.58%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  342 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENLL 623
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNG    +  +L  + QAIVTG+G +EN L
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLA-MSGMLGFYAQAIVTGEGPVENWL 100          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.550e-14
Identity = 64/182 (35.16%), Postives = 83/182 (45.60%), Query Frame = 3
Query:   84 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIENLLR 626
            +P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +K G+      W+ AG  Q F+     ++    L H   I   W   +   G V    I                 F+PL  A  P Q  E K KEL NG    +L  L   VQ  VTGKG  ENLL+
Sbjct:   63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLA-MLAFLGFVVQHNVTGKGPFENLLQ 236          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 71/233 (30.47%), Postives = 95/233 (40.77%), Query Frame = 3
Query:   48 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGPSGYVLHVLDSFVQAIVTGKGSIEN 617
            DRP +      ++P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG ++    G  YLG P      ++  IW  +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+     V   L   VQA  TGKG + N
Sbjct:   51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMV-GFLGFAVQAAATGKGPLNN 267          
BLAST of EY675185 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.328e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 3
Query:   81 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 302
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
The following BLAST results are available for this feature:
BLAST of EY675185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB23_PEA3.354e-1834.91Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC9.760e-1833.91Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR1.193e-1552.58Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_ARATH8.550e-1435.16Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4B_ARATH1.365e-1130.47Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
LH18_EUGGR2.328e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675185 ID=EY675185; Name=EY675185; organism=Citrus sinensis; type=EST; length=1013bp
CCACGCGTCCGGTCAAATCCGCTCCCCACAGCATCTGGTACGGCCCAGAC
CGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGAC
TGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAG
ACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGA
TGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAA
GAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAA
TATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCAT
GCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTT
TGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACC
CACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCC
GATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGGCCGTCTGG
CTATGTTCTCCATGTTTTGGATTCTTTTGTTCAGGCTATTGTCACTGGGA
AGGGGTCAATTGAAAACCTCCTACGACCCACATTGCTGATCCTGGGGCCA
ACAATGCCTGGGGCCTTATCCCCCTAACTTTTGTTTCCCGGAAAAATAAA
AAAAAACCCCATGATTTGGAATGGGGGCCTTTTTTCCGCCTGTAACTTTA
TTCTATGGTTCCATAGGGGGTTTTTGGGGAAAACTCGTGCCGGGGAATGT
TTTTAAATACCTCCTGATGGGTTACCCTTTGAAAAGGGCTACGCCTCCGG
AATTTTTTTATTTTATAAAAAAAAAAAAAAAAAGAGGGGGGGGCCCCCCC
CTAAAAAGAGAGACACAAATTATAAAATAAACCGCAGTGGGACGAGGAAA
AAGAACACAATAAACAACCCCTCCTCGAAATAAAGGGGGGGCCACCCGCC
TATGATATTTTCC
back to top