EY675183

Overview
NameEY675183
Unique NameEY675183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 6.117e-20
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            M+++H  RN+  CP VN+D LW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.117e-20
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH   NK++CP +NVD+LWS+V ++V+A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   58 MRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH   NK++CP +NVD+LWS+V ++++A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   58 MRVFHLKANKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.780e-19
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 271
            M+++H  RN+  CP VN+D LW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL
Sbjct:   58 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.780e-19
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH   NK++CP +NVD+LWS+V ++V    K   + + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   58 MRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4)

HSP 1 Score: 93.9745 bits (232), Expect = 3.036e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR++H  RN+  CP VN+D  W++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.178e-19
Identity = 53/92 (57.61%), Postives = 57/92 (61.96%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA*VY 286
            MRYFH LRNKF+C IVN+D LWSMV                          LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT  +Y
Sbjct:   39 MRYFHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLTFLLY 104          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.356e-18
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR+FH LRN    PI+N++ LW++VP E + K    A+ +  P+ID+   GY K+LGKG LP+  P+VV+A+ VS  AE+KIKEAGG + L A
Sbjct:   58 MRHFHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR++H  +N+  CP +N+D LW++V ++ +   AK  +   P+ID    GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MRYFH  +  F  P++N+D LW+++P++ + +    ASK+  P+ID    GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct:   58 MRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149          
The following BLAST results are available for this feature:
BLAST of EY675183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27A_HUMAN6.117e-2051.0960S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
R27A2_ENTHI6.117e-2051.6160S ribosomal protein L27a-2/4 OS=Entamoeba histol... [more]
R27A1_ENTHI7.989e-2050.5460S ribosomal protein L27a-1 OS=Entamoeba histolyt... [more]
RL27A_PANTR1.780e-1951.1160S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]
R27A3_ENTHI1.780e-1951.6160S ribosomal protein L27a-3 OS=Entamoeba histolyt... [more]
RL27A_MOUSE3.036e-1951.0960S ribosomal protein L27a OS=Mus musculus GN=Rpl2... [more]
R27A1_ARATH5.178e-1957.61Putative 60S ribosomal protein L27a-1 OS=Arabidops... [more]
RL28_NEUCR3.356e-1849.4660S ribosomal protein L28 OS=Neurospora crassa GN=... [more]
RL27A_XENLA4.384e-1848.9160S ribosomal protein L27a OS=Xenopus laevis GN=rp... [more]
RL28_YEAST1.275e-1748.3960S ribosomal protein L28 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675183 ID=EY675183; Name=EY675183; organism=Citrus sinensis; type=EST; length=445bp
CACNCGTCCGATGAGGTACTTCCACACACTGCGTAATAAATTTCATTGCC
CAATTGTGAACGTCGACACGCTTTGGTCGATGGTACCTCAGGAGGTCAAA
GCCAAGGCTTCCAAAGACAATGTGCCAATGATCGATGTGACTCAGTTTGG
CTACTTTAAGGTTTTGGGTAAGGGCGTTTTGCCTGAGAACCAACCCGTTG
TGGTGAAGGCCAAGCTTGTTTCCAAGACAGCCGAGAAGAAAATTAAAGAA
GCTGGTGGAGCTGTTGTGCTTACTGCTTAGGTTTACTGTTATTGTTTTTA
GAAAATTTTTGTGATATTTTGGATTTCAGTTTTTGAATATTTGACTATTT
TTACATGTAGTTTTGGATGTTTATGTTATCATTTGAAACTTTTTGCTTTA
TATTGAGACCTGTTATTGATTAAAAAAAGAAAAAAAAAAAAAAAA
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