EY675183

Overview
NameEY675183
Unique NameEY675183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6913 contig Csv1_Contig6913:14..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH ++N    P VN+D LW++VP E + K    N    P+I+V Q GY KVLGKG LP+  PV+++ + VS+ AE+KIK+AGG V L A
Sbjct:   58 MRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH ++N    P VN+D LW+++P E + K    N    P+I+V Q GY KVLGKG LPE  PV+V+ + VS+ AE+KIK+AGG V L A
Sbjct:   58 MRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MRYFH   N F  P++N++ LWS++P E +    +  + D +P+ID+   GY KVLGKG +P+  P+VV+A+  SK AE+KI EAGG V L A
Sbjct:   58 MRYFHKQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRARWFSKEAERKITEAGGVVELVA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_DROME (60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 9.141e-16
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH  R     P +N+D LWS+V  E  A+  K+     P+ID+ +FGY+K+LG+G LP  +PV+VKAK  SK AE KIK+AGG  +L+A
Sbjct:   59 MRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_TRYBB (60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.594e-12
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDNV-PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            M ++H  +N    P +N+D L  ++ ++   KA K  V P+ID+   GY K+LG G L    P +VKA+ VSK A+KKI++AGGAVVL A
Sbjct:   58 MNHYHKKKNTTWKPTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145          
The following BLAST results are available for this feature:
BLAST of EY675183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL28B_SCHPO1.842e-1648.9160S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28A_SCHPO1.842e-1650.0060S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
RL27A_ERYGR1.842e-1647.3160S ribosomal protein L27a OS=Erysiphe graminis su... [more]
RL27A_DROME9.141e-1648.9160S ribosomal protein L27a OS=Drosophila melanogas... [more]
RL27A_TRYBB3.594e-1244.4460S ribosomal protein L27a OS=Trypanosoma brucei b... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675183 ID=EY675183; Name=EY675183; organism=Citrus sinensis; type=EST; length=445bp
CACNCGTCCGATGAGGTACTTCCACACACTGCGTAATAAATTTCATTGCC
CAATTGTGAACGTCGACACGCTTTGGTCGATGGTACCTCAGGAGGTCAAA
GCCAAGGCTTCCAAAGACAATGTGCCAATGATCGATGTGACTCAGTTTGG
CTACTTTAAGGTTTTGGGTAAGGGCGTTTTGCCTGAGAACCAACCCGTTG
TGGTGAAGGCCAAGCTTGTTTCCAAGACAGCCGAGAAGAAAATTAAAGAA
GCTGGTGGAGCTGTTGTGCTTACTGCTTAGGTTTACTGTTATTGTTTTTA
GAAAATTTTTGTGATATTTTGGATTTCAGTTTTTGAATATTTGACTATTT
TTACATGTAGTTTTGGATGTTTATGTTATCATTTGAAACTTTTTGCTTTA
TATTGAGACCTGTTATTGATTAAAAAAAGAAAAAAAAAAAAAAAA
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