EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BORPD (Tryptophan synthase beta chain OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 71/263 (27.00%), Postives = 112/263 (42.59%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + +G+ C V+       ++      M+  GA V P      E+G + L+           A++EA     TN + T Y +G+V         V   QTVIG EC++QM +  G  PD ++   GGGSN  G+ +P+I  + N ++  V  A E          + A   G   G    +  +  G       + AG L Y G+ P  + + +    + + I   E         R EGI+PA E++HAIA  ++
Sbjct:  120 HGVATATVAARYGMECVVYMGSEDVRRQASNVYRMKLLGATVVP-----VESGSRTLKD----------ALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGNECLEQMPQDAGRQPDYVVASVGGGSNAMGIFYPYIPHE-NVRLIGVEAAGEGLDSGRHAASLAAGQVGVLHGNRTYVMQNADGQVQETHSVSAG-LDYPGVGPEHAWLKDSGRAQYVGITDDEALAAFHDCCRIEGIMPALESSHAIAQAVK 365          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BORPA (Tryptophan synthase beta chain OS=Bordetella parapertussis GN=trpB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 72/263 (27.38%), Postives = 110/263 (41.83%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + +G+ C V+       ++      M+  GA V P      ++G + L+           A++EA     TN + T Y +G+V         V   QTVIG+EC+ QM E +G  PD ++   GGGSN  G+  P+I  + N ++  V  A E          + A   G   G    +  +  G       + AG L Y G+ P  + + +    E   I   E         R EGI+PA E+ HAIA  ++
Sbjct:  120 HGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGATVVP-----VDSGSRTLKD----------ALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMPEVIGRQPDYVVAAVGGGSNAMGIFHPYIPYE-NVRLIGVEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAG-LDYPGVGPEHAWLKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVK 365          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BORBR (Tryptophan synthase beta chain OS=Bordetella bronchiseptica GN=trpB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 72/263 (27.38%), Postives = 110/263 (41.83%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + +G+ C V+       ++      M+  GA V P      ++G + L+           A++EA     TN + T Y +G+V         V   QTVIG+EC+ QM E +G  PD ++   GGGSN  G+  P+I  + N ++  V  A E          + A   G   G    +  +  G       + AG L Y G+ P  + + +    E   I   E         R EGI+PA E+ HAIA  ++
Sbjct:  120 HGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGATVVP-----VDSGSRTLKD----------ALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMPEVIGRQPDYVVAAVGGGSNAMGIFHPYIPYE-NVRLIGVEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAG-LDYPGVGPEHAWLKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVK 365          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_AERHH (Tryptophan synthase beta chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=trpB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 78/280 (27.86%), Postives = 114/280 (40.71%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIR--AVEPTAWPSLTKGVYAYDFGDTA-----GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEK 796
            H  A A +C+L GL C V+      +++      M+  GA V P  S                  +L  A +EA    A N ++  Y LG+          V   Q +IGEE   Q  E     PD +I C GGGSN  G+   FI E       P +R   VEP     +  G +    G  +     GM   +   T G       + AG L +  + P  +H+  +   E  S+   E      + A++EGIIPA E++HA+A  ++ A    E E+
Sbjct:  114 HGVATALACALLGLKCRVYMGAKDCERQKPNVFRMKLMGATVIPVHS---------------GSSTLKDACNEALRDWAANYESAHYLLGTAAGPHPFPTIVREFQKMIGEEAKAQCFEKEERLPDAVIACVGGGSNAIGMFADFIDE-------PSVRLIGVEPGGH-GIESGEHGAPLGHGSKGVFFGMHSYLMQDTQGQIQESYSVSAG-LDFPSVGPQHAHLAAIGRAEYPSVTDKEALDAFQELAKSEGIIPALESSHALAHALKMARSEPEKEQ 369          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_VIBSL (Tryptophan synthase beta chain OS=Vibrio splendidus (strain LGP32) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 77/267 (28.84%), Postives = 115/267 (43.07%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPS-LTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L GL C V+      +++      M+  GA+V P  S                  +L  A +EA  + +AT  D  Y LG+          V   Q +IGEE   Q+ A  G  PD +I C GGGSN  G+   FI E   +L G + P  + ++     + L  G     FG  A   PLM+    G       + AG L +  + P  +H+  +   E  ++   E  +     AR EGII A E++HA+A  ++
Sbjct:  114 HGVATALACALLGLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSSTLKDACNEALRDWSATYEDAHYLLGTAAGPHPFPTIVRDFQRMIGEETKNQILAREGRLPDAVIACVGGGSNAIGMFADFIEEESVRLIG-VEPAGKGIDTDQHGAPLKHGKTGIFFGMKA---PLMQDEN-GQVEESYSVSAG-LDFPSVGPQHAHLNAIGRAEYDNVTDDEALEAFQLIARKEGIIAALESSHALAHAVK 359          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAW (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain MW2) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAT (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAS (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain MSSA476) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAE (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain Newman) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAC (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain COL) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_BORPD9.202e-1227.00Tryptophan synthase beta chain OS=Bordetella petri... [more]
TRPB_BORPA9.202e-1227.38Tryptophan synthase beta chain OS=Bordetella parap... [more]
TRPB_BORBR9.202e-1227.38Tryptophan synthase beta chain OS=Bordetella bronc... [more]
TRPB_AERHH9.202e-1227.86Tryptophan synthase beta chain OS=Aeromonas hydrop... [more]
TRPB_VIBSL1.202e-1128.84Tryptophan synthase beta chain OS=Vibrio splendidu... [more]
TRPB_STAAW1.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAT1.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAS1.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAE1.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAC1.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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