EY656642
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAA8 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain NCTC 8325) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2 Query: 158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 G K++ ++ G+L A+++A + ++ D T Y LGS L V Q+VIG+E Q ++ G PD I+ C GGGSN G +PFI++ + G P + G Y D G L H++ + GL Y G+ P S+ +++ + + T+ I F + EGIIPA E+ HA++ Sbjct: 160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAA3 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2 Query: 158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 G K++ ++ G+L A+++A + ++ D T Y LGS L V Q+VIG+E Q ++ G PD I+ C GGGSN G +PFI++ + G P + G Y D G L H++ + GL Y G+ P S+ +++ + + T+ I F + EGIIPA E+ HA++ Sbjct: 160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_SHEDO (Tryptophan synthase beta chain OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 76/267 (28.46%), Postives = 111/267 (41.57%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE-PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A +C+L GL C+V+ +++ M+ GA+V P S +L A +EA + + D Y LG+ V Q +IGEE +Q +E G PD +I C GGGSN G+ FI E +L G + P + ++ P L G FG A PLM+ + GL + + P +H+ + S E Q AR EGIIPA E+ HA+A ++ Sbjct: 116 HGVATALACALLGLKCKVYMGAKDVERQSPNVFRMKLMGAEVIPVTS---------------GSATLKDACNEAMRDWSASYDKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQILEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVELIG-VEPAGKGIDTPMHGAPLKHGKTGIFFGMKA---PLMQDRD--GQIEESYSVSAGLDFPSVGPQHAHLNAIGRARYESATDDEALAMFQQLARCEGIIPALESAHALAYAVK 361
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_LACCB (Tryptophan synthase beta chain OS=Lactobacillus casei (strain BL23) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 70/260 (26.92%), Postives = 114/260 (43.85%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTKYCLGSVLN-----HVLLH-QTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A +L G++CE++ + D++ M+ GAKVHP S G +L+ + E A+ + DT Y LGS + ++ H Q+VI E +Q++A PD+++ C GGGSN G SF + + ++ V A + + G GM L + G DP++ + GL Y G+ P + + + + + I E + A+ EGI+ A E+ HAIA Sbjct: 125 HGVATATIAALMGMDCEIFMGKEDTDRQKLNVYRMELLGAKVHPVTS-----GSMVLK---------DAVNATLQEWASRSDDTFYVLGSAVGPAPFPEMVKHFQSVISTESKQQLQAKETRLPDMVVACVGGGSNAIG-SFAAYIDDPSVQLVGVEAAGKGVDTDRTAATIERGSVGIFHGMKSLFMQNEDGQ---IDPVYSISAGLDYPGVGPEHAALAQEGRAQYVGITDDEAVEAFTYIAKQEGIVAAIESCHAIA 366
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRUAB (Tryptophan synthase beta chain OS=Brucella abortus GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 77/274 (28.10%), Postives = 116/274 (42.34%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE--------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A + FGL C V+ +++ M+ GA+V P AG G+L A++EA TN DT Y +G+ V Q+VIG E +Q +E G PD+I+ GGGSN GL PF+ + K+ G + R +E P + G Y + G +++ H++ + GL Y G+ P S + + ++ + I E RTEGIIPA E+ HAIA ++ Sbjct: 127 HGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKP-----VSAGN----------GTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVG-VEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQ--ILEGHSV----------SAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVK 372
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA2 (Tryptophan synthase beta chain OS=Brucella abortus (strain 2308) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 77/274 (28.10%), Postives = 116/274 (42.34%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE--------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A + FGL C V+ +++ M+ GA+V P AG G+L A++EA TN DT Y +G+ V Q+VIG E +Q +E G PD+I+ GGGSN GL PF+ + K+ G + R +E P + G Y + G +++ H++ + GL Y G+ P S + + ++ + I E RTEGIIPA E+ HAIA ++ Sbjct: 127 HGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKP-----VSAGN----------GTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVG-VEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQ--ILEGHSV----------SAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVK 372
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA1 (Tryptophan synthase beta chain OS=Brucella abortus (strain S19) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 77/274 (28.10%), Postives = 116/274 (42.34%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE--------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A + FGL C V+ +++ M+ GA+V P AG G+L A++EA TN DT Y +G+ V Q+VIG E +Q +E G PD+I+ GGGSN GL PF+ + K+ G + R +E P + G Y + G +++ H++ + GL Y G+ P S + + ++ + I E RTEGIIPA E+ HAIA ++ Sbjct: 127 HGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKP-----VSAGN----------GTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVG-VEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQ--ILEGHSV----------SAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVK 372
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_AERS4 (Tryptophan synthase beta chain OS=Aeromonas salmonicida (strain A449) GN=trpB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 74/273 (27.11%), Postives = 113/273 (41.39%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYD-QKP--YRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTKYCLGSVLNH------VLLHQTVIGEE----CIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA-----GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A +C+L GL C V+ + QKP +R +M VH S + +A + L+ + AA+ + Y LG+ V Q +IGEE C K+ E + PD +I C GGGSN G+ FI K + VEP + G + G + GM + G + A GL + + P +H+ + E +SI E + A++EGIIPA E++HA+A ++ Sbjct: 114 HGVATALACALLGLKCRVYMGAKDCERQKPNVFRMKLMGATVIPVHSGSSTLKDACNEALR-----------------DWAASYDNAHYLLGTAAGPHPFPTIVREFQKMIGEEAKAQCFKKEERL---PDAVIACVGGGSNAIGMFADFIDNK-----EVRLIGVEP-GGHGIESGEHGAPLGHGSKGVFFGMHSYLMQDKQGQIQESYSVSA-GLDFPSVGPQHAHLASIGRAEYVSITDKEALDAFQELAKSEGIIPALESSHALAHALK 359
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_TOLAT (Tryptophan synthase beta chain OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11 Identity = 75/283 (26.50%), Postives = 121/283 (42.76%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPS----LTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRL 805 H A A +C+L L C ++ +++ M+ GA+V P AG L+ A +EA + A DT Y LG+ V Q +IGEE +Q ++A G PD ++ C GGGSN G+ FI E +L G + P +E + KG+Y GM + + G I A GL + + P +++ + + S+ E + + EGIIPA E++HA+A ++ + E EK+++ Sbjct: 114 HGVATALACALLDLPCRIYMGAVDCERQKPNVFRMRLMGAEVIP-----VHAGSSTLKD----------ACNEAMRDWTANYKDTHYILGTAAGPHPFPTIVREFQRMIGEEAKEQILKAEGRLPDAVVACVGGGSNAIGMFATFIEEEGVRLIG-VEPAGHGIETGKHGAPIGHARKGIY-------LGMVSFLMQNEDGQVEESHSISA-GLDFPSVGPQHAYLSSIGRAQYPSVTDQEALDAFQELSLREGIIPALESSHALAHALK--MARSEPEKEQI 370
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11 Identity = 81/291 (27.84%), Postives = 125/291 (42.96%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLM---KMHTLGHDF--IPDPIH-AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRLSDGMCAMDI 832 H A A +C+LFGL+C ++ ++ M+ GA+V ++G + L+ AI+EA N D T Y G+V V VIG E +Q +E G PD + C GGGSN GL FI + + EP A L G +A TAG ++ + + L D I +P + GL Y G+ P +++ + E ++ Q +RTEGIIPA E+ HA+A + E+ K+ DG+ +++ Sbjct: 128 HGVATATACALFGLDCTIYMGEIDTQRQALNVARMRMLGAEVIA-----VKSGSRTLKD----------AINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDT-----GVRLIGCEP-AGHGLETGEHAATL--TAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGAL-------EIGKELGKDGLILVNL 388 The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 296
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bpback to top |