EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAA8 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain NCTC 8325) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAA3 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G              P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EGIIPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_SHEDO (Tryptophan synthase beta chain OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 76/267 (28.46%), Postives = 111/267 (41.57%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE-PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L GL C+V+      +++      M+  GA+V P  S                  +L  A +EA    + + D   Y LG+          V   Q +IGEE  +Q +E  G  PD +I C GGGSN  G+   FI E   +L G + P  + ++ P     L  G     FG  A   PLM+              + GL +  + P  +H+  +      S    E      Q AR EGIIPA E+ HA+A  ++
Sbjct:  116 HGVATALACALLGLKCKVYMGAKDVERQSPNVFRMKLMGAEVIPVTS---------------GSATLKDACNEAMRDWSASYDKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQILEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVELIG-VEPAGKGIDTPMHGAPLKHGKTGIFFGMKA---PLMQDRD--GQIEESYSVSAGLDFPSVGPQHAHLNAIGRARYESATDDEALAMFQQLARCEGIIPALESAHALAYAVK 361          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_LACCB (Tryptophan synthase beta chain OS=Lactobacillus casei (strain BL23) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 70/260 (26.92%), Postives = 114/260 (43.85%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTKYCLGSVLN-----HVLLH-QTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A   +L G++CE++  +   D++      M+  GAKVHP  S     G  +L+             +   E A+ + DT Y LGS +       ++ H Q+VI  E  +Q++A     PD+++ C GGGSN  G SF    +  + ++  V  A +          +     G   GM  L   +  G     DP++  + GL Y G+ P  + + +    + + I   E  +     A+ EGI+ A E+ HAIA
Sbjct:  125 HGVATATIAALMGMDCEIFMGKEDTDRQKLNVYRMELLGAKVHPVTS-----GSMVLK---------DAVNATLQEWASRSDDTFYVLGSAVGPAPFPEMVKHFQSVISTESKQQLQAKETRLPDMVVACVGGGSNAIG-SFAAYIDDPSVQLVGVEAAGKGVDTDRTAATIERGSVGIFHGMKSLFMQNEDGQ---IDPVYSISAGLDYPGVGPEHAALAQEGRAQYVGITDDEAVEAFTYIAKQEGIVAAIESCHAIA 366          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRUAB (Tryptophan synthase beta chain OS=Brucella abortus GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 77/274 (28.10%), Postives = 116/274 (42.34%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE--------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + FGL C V+      +++      M+  GA+V P       AG           G+L  A++EA     TN  DT Y +G+          V   Q+VIG E  +Q +E  G  PD+I+   GGGSN  GL  PF+ +   K+ G +    R +E            P +  G   Y   +  G   +++ H++          + GL Y G+ P  S + +   ++ + I   E         RTEGIIPA E+ HAIA  ++
Sbjct:  127 HGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKP-----VSAGN----------GTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVG-VEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQ--ILEGHSV----------SAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVK 372          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA2 (Tryptophan synthase beta chain OS=Brucella abortus (strain 2308) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 77/274 (28.10%), Postives = 116/274 (42.34%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE--------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + FGL C V+      +++      M+  GA+V P       AG           G+L  A++EA     TN  DT Y +G+          V   Q+VIG E  +Q +E  G  PD+I+   GGGSN  GL  PF+ +   K+ G +    R +E            P +  G   Y   +  G   +++ H++          + GL Y G+ P  S + +   ++ + I   E         RTEGIIPA E+ HAIA  ++
Sbjct:  127 HGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKP-----VSAGN----------GTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVG-VEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQ--ILEGHSV----------SAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVK 372          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA1 (Tryptophan synthase beta chain OS=Brucella abortus (strain S19) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 77/274 (28.10%), Postives = 116/274 (42.34%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE--------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + FGL C V+      +++      M+  GA+V P       AG           G+L  A++EA     TN  DT Y +G+          V   Q+VIG E  +Q +E  G  PD+I+   GGGSN  GL  PF+ +   K+ G +    R +E            P +  G   Y   +  G   +++ H++          + GL Y G+ P  S + +   ++ + I   E         RTEGIIPA E+ HAIA  ++
Sbjct:  127 HGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKP-----VSAGN----------GTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVG-VEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQ--ILEGHSV----------SAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVK 372          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_AERS4 (Tryptophan synthase beta chain OS=Aeromonas salmonicida (strain A449) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 74/273 (27.11%), Postives = 113/273 (41.39%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYD-QKP--YRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTKYCLGSVLNH------VLLHQTVIGEE----CIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA-----GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L GL C V+      + QKP  +R  +M      VH   S + +A  + L+                 + AA+  +  Y LG+          V   Q +IGEE    C K+ E +   PD +I C GGGSN  G+   FI  K        +  VEP     +  G +    G  +     GM   +     G       + A GL +  + P  +H+  +   E +SI   E      + A++EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLGLKCRVYMGAKDCERQKPNVFRMKLMGATVIPVHSGSSTLKDACNEALR-----------------DWAASYDNAHYLLGTAAGPHPFPTIVREFQKMIGEEAKAQCFKKEERL---PDAVIACVGGGSNAIGMFADFIDNK-----EVRLIGVEP-GGHGIESGEHGAPLGHGSKGVFFGMHSYLMQDKQGQIQESYSVSA-GLDFPSVGPQHAHLASIGRAEYVSITDKEALDAFQELAKSEGIIPALESSHALAHALK 359          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_TOLAT (Tryptophan synthase beta chain OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 75/283 (26.50%), Postives = 121/283 (42.76%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPS----LTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRL 805
            H  A A +C+L  L C ++      +++      M+  GA+V P       AG   L+           A +EA  +  A   DT Y LG+          V   Q +IGEE  +Q ++A G  PD ++ C GGGSN  G+   FI E   +L G + P    +E     +      KG+Y        GM   +  +  G       I A GL +  + P  +++  +   +  S+   E      + +  EGIIPA E++HA+A  ++  +   E EK+++
Sbjct:  114 HGVATALACALLDLPCRIYMGAVDCERQKPNVFRMRLMGAEVIP-----VHAGSSTLKD----------ACNEAMRDWTANYKDTHYILGTAAGPHPFPTIVREFQRMIGEEAKEQILKAEGRLPDAVVACVGGGSNAIGMFATFIEEEGVRLIG-VEPAGHGIETGKHGAPIGHARKGIY-------LGMVSFLMQNEDGQVEESHSISA-GLDFPSVGPQHAYLSSIGRAQYPSVTDQEALDAFQELSLREGIIPALESSHALAHALK--MARSEPEKEQI 370          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 81/291 (27.84%), Postives = 125/291 (42.96%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLM---KMHTLGHDF--IPDPIH-AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRLSDGMCAMDI 832
            H  A A +C+LFGL+C ++       ++      M+  GA+V        ++G + L+           AI+EA      N D T Y  G+V         V     VIG E  +Q +E  G  PD  + C GGGSN  GL   FI +         +   EP A   L  G +A     TAG   ++   + + L  D   I +P   + GL Y G+ P  +++ +    E  ++      Q     +RTEGIIPA E+ HA+A  +       E+ K+   DG+  +++
Sbjct:  128 HGVATATACALFGLDCTIYMGEIDTQRQALNVARMRMLGAEVIA-----VKSGSRTLKD----------AINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDT-----GVRLIGCEP-AGHGLETGEHAATL--TAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGAL-------EIGKELGKDGLILVNL 388          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_STAA81.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAA31.202e-1127.78Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_SHEDO1.202e-1128.46Tryptophan synthase beta chain OS=Shewanella denit... [more]
TRPB_LACCB1.202e-1126.92Tryptophan synthase beta chain OS=Lactobacillus ca... [more]
TRPB_BRUAB1.202e-1128.10Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_BRUA21.202e-1128.10Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_BRUA11.202e-1128.10Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_AERS41.202e-1127.11Tryptophan synthase beta chain OS=Aeromonas salmon... [more]
TRPB_TOLAT1.570e-1126.50Tryptophan synthase beta chain OS=Tolumonas auensi... [more]
TRPB_STRAW1.570e-1127.84Tryptophan synthase beta chain OS=Streptomyces ave... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
back to top