EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAB (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 59/216 (27.31%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            G K++ ++    G+L  A+++A +   ++ D T Y LGS L        V   Q+VIG+E   Q ++  G  PD I+ C GGGSN  G  +PFI++ +          G+             P +  G   Y   D  G   L   H++          + GL Y G+ P  S+ +++  +   +   T+     I F + EG IPA E+ HA++
Sbjct:  160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGEDTDKHALAIGKGSPGVLHGTKMYLIQDEGGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGTIPAIESAHALS 362          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PSYIN (Tryptophan synthase beta chain OS=Psychromonas ingrahamii (strain 37) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 78/272 (28.68%), Postives = 115/272 (42.28%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L GL C V+      +++      M+  GA+V P  S                  +L  A +EA    A + DT  Y LG+V         V   Q +IGEE  +Q ++  G  PD +I C GGGSN  G+   FI +   +L G + P  R +E      P  + S  KG++        GM  LM     G       I AG L +  + P  +H+ E    + +     E      + +  EGIIPA E+ HA+A  ++
Sbjct:  114 HGVAAALACALLGLKCRVYMGAVDCERQKPNVFRMRLMGAEVIPVHS---------------GSSTLKDACNEALRDWAGSYDTAHYLLGTVAGPHPFPTIVREFQKIIGEEAKQQVLKKEGVLPDKVIACVGGGSNAIGIFNDFIDDPSVELIG-VEPGGRGIETGKHGCPITYGS--KGIFF-------GMHSLMMQDKHGQVKESYSISAG-LDFPSVGPQHAHLAETGRAQYVYATDDEALDAFHELSLKEGIIPALESAHALAHALK 359          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 74/273 (27.11%), Postives = 114/273 (41.76%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHD---FIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787
            H  A A +C+L  L C V+        K  +R  M  +  ++H   +++ E          S   +L  A++EA  + A++  DT Y LG+          V   Q +IG+E   Q +E     PD +I C GGGSN  G+   F+ +K        +  VEP      T    A       G+    K + L  D          + GL Y G+ P  S++ E       S    E  +      + EGIIPA E++HA+A  ++ A +C+E
Sbjct:  113 HGVATAIACALLNLKCVVFM-----GSKDIKRQEMNVF--RMHLLGAEVREVN--------SGSATLKDAVNEALRDWASSYKDTHYLLGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDK-----EVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEE 365          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_AZOPC (Tryptophan synthase beta chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 69/264 (26.14%), Postives = 109/264 (41.29%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVL------NHVLLHQTVIGEECIKQMEAVGET--PDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKG-----VYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAI 751
            H  A A  C+L  + C V+  +   +++      M+  GA V P  S                  +L  A +EA     +N D T Y +GS +      + V   Q++I +E   Q+        PD +I C GGGSN  G  + ++ +      N V   +   A   +  G     ++    G   G   L+   + G    P  I AG L Y G+ P+ +H+ +    E ++I   E    A++  R EGIIPA E+ HA+
Sbjct:  124 HGVASATVCALMDMKCVVYMGKTDINRQNLNVRKMEMLGATVIPVTSGNM---------------TLKDATNEAIRDWCSNPDDTHYIIGSTVGPHPYPDMVARFQSIISKEIKSQLPEKENRNYPDYLIACIGGGSNAAGTIYEYLYD------NRVKIILAEAAGQGIHSGHSAATIHLGKIGIIHGSKTLIMQTSDGQIEEPYSISAG-LDYPGIGPMHAHIAKQGRSEILAIDDNEALSAAMELTRLEGIIPALESAHAL 365          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRP_COPC7 (Tryptophan synthase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TRP-1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 73/285 (25.61%), Postives = 116/285 (40.70%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKL----------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQR 802
            H  A A  C+ FGL C ++       ++      ++  G K    P               S   +L  A++EA     TN + T Y +GS +        V   Q VIGEE   Q++ V G+ PD+++ C GGGSN  G  + FI +K            G       A      P +  GV  Y   D AG   +++ H++          + GL Y G+ P  + + +    + +     +  +      + EGIIPA E++HAI + ++ A   K L K +
Sbjct:  408 HGVATATVCAKFGLECVIYMGAEDVRRQALNVFRIEMLGGKAWVIPVH-------------SGSCTLKDAVNEAMRDWVTNLSTTHYLVGSAIGPHPFPTIVRDFQKVIGEEIKAQLKEVRGKLPDVVVACVGGGSNAIGTFYDFIPDKSVRLVGVEAGGEGIDGHKHSATLSMGQPGVLHGVRTYILQDKAGQ--IIETHSI----------SAGLDYPGVGPEHAWLKDSGRADYVVCTDEDALRGFRMLTQKEGIIPALESSHAIWEGVKIA---KSLPKDK 664          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PSEA6 (Tryptophan synthase beta chain OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 70/270 (25.93%), Postives = 111/270 (41.11%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--------AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTI 763
            H  A A +C+L GL   ++      +++      M+  GA+V P       AG           G+L  A++EA  + +AT     Y LG+          V     +IGEE   Q+ A  G  PD ++ C GGGSN  G+   FI E      +  +  VEP       KG++  + G   G      +H      + D           + GL Y  + P  +H++++      ++   E        +R EGIIPA E++HA+A  +
Sbjct:  114 HGVATALACALLGLKARIYMGAKDVERQAPNVFRMRLMGAEVIP-----VNAGS----------GTLKDAVNEAMRDWSATYDKAHYLLGTAAGPHPFPTIVREFHRMIGEETRAQIMAKEGRLPDAVVACVGGGSNAIGMFADFIDEP-----SVQLIGVEPAG-----KGLHTAEHGAAIGKGTTGILHGAYSYIMQDEDGQIEESYSVSAGLDYPAVGPQHAHLHDIGRATYAAVTDDEALYAFQLLSRKEGIIPALESSHALAHAL 358          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_NITEC (Tryptophan synthase beta chain OS=Nitrosomonas eutropha (strain C91) GN=trpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 73/269 (27.14%), Postives = 111/269 (41.26%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKL----------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A   + +G+ C V+       ++      M+  GA V P      ++G + L+           A++EA     TN  +T Y +G+V         V   Q VIG E  +QM E  G  PD +I C GGGSN  GL +P+I E+            G       A   T  P +  G   Y   D  G   +++ H++          + GL Y G+ P  + + +    E ++I   E         R EGI+PA E++HA+A
Sbjct:  120 HGVASATVAARYGMECVVYMGSEDVKRQATNVYRMKLLGATVIP-----VDSGSRTLKD----------ALNEAMRDWVTNVGNTYYIIGTVAGPHPYPMMVRDFQAVIGNEARQQMQEEYGRQPDALIACVGGGSNAIGLFYPYIGEENVRMIGVEAAGKGIDTQKHAATLVTGRPGVLHGNRTYLIQDENGQ--IIETHSI----------SAGLDYPGVGPEHAWLKDCGRAEYVAITDGEALAAFHALCRFEGIMPALESSHALA 361          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_MYCTU (Tryptophan synthase beta chain OS=Mycobacterium tuberculosis GN=trpB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 73/273 (26.74%), Postives = 111/273 (40.66%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L GL+C ++       ++      M+  GA+V        + G K L+           AI+EA      NAD T YC G+          V   Q +IG E   Q++   G  PD ++ C GGGSN  G+   F+          E     +     A   TA  P    G ++Y   D  G T  ++ H++          + GL Y G+ P  + + E   ++   I  +E         R EGIIPA E+ HA+A  ++
Sbjct:  141 HGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVA-----VQTGSKTLKD----------AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQT--IESHSI----------SAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALK 386          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_MYCBO (Tryptophan synthase beta chain OS=Mycobacterium bovis GN=trpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 73/273 (26.74%), Postives = 111/273 (40.66%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L GL+C ++       ++      M+  GA+V        + G K L+           AI+EA      NAD T YC G+          V   Q +IG E   Q++   G  PD ++ C GGGSN  G+   F+          E     +     A   TA  P    G ++Y   D  G T  ++ H++          + GL Y G+ P  + + E   ++   I  +E         R EGIIPA E+ HA+A  ++
Sbjct:  141 HGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVA-----VQTGSKTLKD----------AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQT--IESHSI----------SAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALK 386          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BORPE (Tryptophan synthase beta chain OS=Bordetella pertussis GN=trpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 72/263 (27.38%), Postives = 107/263 (40.68%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A   + +G+ C V+       ++      M+  GA V P  S                  +L  A++EA     TN + T Y +G+V         V   QTVIG+EC+ QM E +G  PD ++   GGGSN  G+  P+I  + N ++  V  A E          + A   G   G    +  +  G       + AG L Y G+ P  + + +    E   I   E         R EGI+PA E+ HAIA  ++
Sbjct:  120 HGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGATVVPVDSGSC---------------TLKDALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMPEVIGRQPDYVVAAVGGGSNAMGIFHPYIPYE-NVRLIGVEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAG-LDYPGVGPEHAWLKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVK 365          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_STAAB1.570e-1127.31Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_PSYIN1.570e-1128.68Tryptophan synthase beta chain OS=Psychromonas ing... [more]
TRPB_HELPY1.570e-1127.11Tryptophan synthase beta chain OS=Helicobacter pyl... [more]
TRPB_AZOPC1.570e-1126.14Tryptophan synthase beta chain OS=Azobacteroides p... [more]
TRP_COPC72.050e-1125.61Tryptophan synthase OS=Coprinopsis cinerea (strain... [more]
TRPB_PSEA62.050e-1125.93Tryptophan synthase beta chain OS=Pseudoalteromona... [more]
TRPB_NITEC2.050e-1127.14Tryptophan synthase beta chain OS=Nitrosomonas eut... [more]
TRPB_MYCTU2.050e-1126.74Tryptophan synthase beta chain OS=Mycobacterium tu... [more]
TRPB_MYCBO2.050e-1126.74Tryptophan synthase beta chain OS=Mycobacterium bo... [more]
TRPB_BORPE2.050e-1127.38Tryptophan synthase beta chain OS=Bordetella pertu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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