EY656642
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_STAAB (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11 Identity = 59/216 (27.31%), Postives = 96/216 (44.44%), Query Frame = 2 Query: 158 GRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL---------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 G K++ ++ G+L A+++A + ++ D T Y LGS L V Q+VIG+E Q ++ G PD I+ C GGGSN G +PFI++ + G+ P + G Y D G L H++ + GL Y G+ P S+ +++ + + T+ I F + EG IPA E+ HA++ Sbjct: 160 GAKVVAVEDGQ-GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGEDTDKHALAIGKGSPGVLHGTKMYLIQDEGGQVQLA--HSI----------SAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGTIPAIESAHALS 362
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PSYIN (Tryptophan synthase beta chain OS=Psychromonas ingrahamii (strain 37) GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11 Identity = 78/272 (28.68%), Postives = 115/272 (42.28%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVE------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A +C+L GL C V+ +++ M+ GA+V P S +L A +EA A + DT Y LG+V V Q +IGEE +Q ++ G PD +I C GGGSN G+ FI + +L G + P R +E P + S KG++ GM LM G I AG L + + P +H+ E + + E + + EGIIPA E+ HA+A ++ Sbjct: 114 HGVAAALACALLGLKCRVYMGAVDCERQKPNVFRMRLMGAEVIPVHS---------------GSSTLKDACNEALRDWAGSYDTAHYLLGTVAGPHPFPTIVREFQKIIGEEAKQQVLKKEGVLPDKVIACVGGGSNAIGIFNDFIDDPSVELIG-VEPGGRGIETGKHGCPITYGS--KGIFF-------GMHSLMMQDKHGQVKESYSISAG-LDFPSVGPQHAHLAETGRAQYVYATDDEALDAFHELSLKEGIIPALESAHALAHALK 359
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11 Identity = 74/273 (27.11%), Postives = 114/273 (41.76%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHD---FIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787 H A A +C+L L C V+ K +R M + ++H +++ E S +L A++EA + A++ DT Y LG+ V Q +IG+E Q +E PD +I C GGGSN G+ F+ +K + VEP T A G+ K + L D + GL Y G+ P S++ E S E + + EGIIPA E++HA+A ++ A +C+E Sbjct: 113 HGVATAIACALLNLKCVVFM-----GSKDIKRQEMNVF--RMHLLGAEVREVN--------SGSATLKDAVNEALRDWASSYKDTHYLLGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDK-----EVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEE 365
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_AZOPC (Tryptophan synthase beta chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11 Identity = 69/264 (26.14%), Postives = 109/264 (41.29%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVL------NHVLLHQTVIGEECIKQMEAVGET--PDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKG-----VYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAI 751 H A A C+L + C V+ + +++ M+ GA V P S +L A +EA +N D T Y +GS + + V Q++I +E Q+ PD +I C GGGSN G + ++ + N V + A + G ++ G G L+ + G P I AG L Y G+ P+ +H+ + E ++I E A++ R EGIIPA E+ HA+ Sbjct: 124 HGVASATVCALMDMKCVVYMGKTDINRQNLNVRKMEMLGATVIPVTSGNM---------------TLKDATNEAIRDWCSNPDDTHYIIGSTVGPHPYPDMVARFQSIISKEIKSQLPEKENRNYPDYLIACIGGGSNAAGTIYEYLYD------NRVKIILAEAAGQGIHSGHSAATIHLGKIGIIHGSKTLIMQTSDGQIEEPYSISAG-LDYPGIGPMHAHIAKQGRSEILAIDDNEALSAAMELTRLEGIIPALESAHAL 365
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRP_COPC7 (Tryptophan synthase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TRP-1 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11 Identity = 73/285 (25.61%), Postives = 116/285 (40.70%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKL----------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQR 802 H A A C+ FGL C ++ ++ ++ G K P S +L A++EA TN + T Y +GS + V Q VIGEE Q++ V G+ PD+++ C GGGSN G + FI +K G A P + GV Y D AG +++ H++ + GL Y G+ P + + + + + + + + EGIIPA E++HAI + ++ A K L K + Sbjct: 408 HGVATATVCAKFGLECVIYMGAEDVRRQALNVFRIEMLGGKAWVIPVH-------------SGSCTLKDAVNEAMRDWVTNLSTTHYLVGSAIGPHPFPTIVRDFQKVIGEEIKAQLKEVRGKLPDVVVACVGGGSNAIGTFYDFIPDKSVRLVGVEAGGEGIDGHKHSATLSMGQPGVLHGVRTYILQDKAGQ--IIETHSI----------SAGLDYPGVGPEHAWLKDSGRADYVVCTDEDALRGFRMLTQKEGIIPALESSHAIWEGVKIA---KSLPKDK 664
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PSEA6 (Tryptophan synthase beta chain OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=trpB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11 Identity = 70/270 (25.93%), Postives = 111/270 (41.11%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--------AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTI 763 H A A +C+L GL ++ +++ M+ GA+V P AG G+L A++EA + +AT Y LG+ V +IGEE Q+ A G PD ++ C GGGSN G+ FI E + + VEP KG++ + G G +H + D + GL Y + P +H++++ ++ E +R EGIIPA E++HA+A + Sbjct: 114 HGVATALACALLGLKARIYMGAKDVERQAPNVFRMRLMGAEVIP-----VNAGS----------GTLKDAVNEAMRDWSATYDKAHYLLGTAAGPHPFPTIVREFHRMIGEETRAQIMAKEGRLPDAVVACVGGGSNAIGMFADFIDEP-----SVQLIGVEPAG-----KGLHTAEHGAAIGKGTTGILHGAYSYIMQDEDGQIEESYSVSAGLDYPAVGPQHAHLHDIGRATYAAVTDDEALYAFQLLSRKEGIIPALESSHALAHAL 358
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_NITEC (Tryptophan synthase beta chain OS=Nitrosomonas eutropha (strain C91) GN=trpB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11 Identity = 73/269 (27.14%), Postives = 111/269 (41.26%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKL----------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + +G+ C V+ ++ M+ GA V P ++G + L+ A++EA TN +T Y +G+V V Q VIG E +QM E G PD +I C GGGSN GL +P+I E+ G A T P + G Y D G +++ H++ + GL Y G+ P + + + E ++I E R EGI+PA E++HA+A Sbjct: 120 HGVASATVAARYGMECVVYMGSEDVKRQATNVYRMKLLGATVIP-----VDSGSRTLKD----------ALNEAMRDWVTNVGNTYYIIGTVAGPHPYPMMVRDFQAVIGNEARQQMQEEYGRQPDALIACVGGGSNAIGLFYPYIGEENVRMIGVEAAGKGIDTQKHAATLVTGRPGVLHGNRTYLIQDENGQ--IIETHSI----------SAGLDYPGVGPEHAWLKDCGRAEYVAITDGEALAAFHALCRFEGIMPALESSHALA 361
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_MYCTU (Tryptophan synthase beta chain OS=Mycobacterium tuberculosis GN=trpB PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11 Identity = 73/273 (26.74%), Postives = 111/273 (40.66%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A +C+L GL+C ++ ++ M+ GA+V + G K L+ AI+EA NAD T YC G+ V Q +IG E Q++ G PD ++ C GGGSN G+ F+ E + A TA P G ++Y D G T ++ H++ + GL Y G+ P + + E ++ I +E R EGIIPA E+ HA+A ++ Sbjct: 141 HGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVA-----VQTGSKTLKD----------AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQT--IESHSI----------SAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALK 386
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_MYCBO (Tryptophan synthase beta chain OS=Mycobacterium bovis GN=trpB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11 Identity = 73/273 (26.74%), Postives = 111/273 (40.66%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQMEA-VGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A +C+L GL+C ++ ++ M+ GA+V + G K L+ AI+EA NAD T YC G+ V Q +IG E Q++ G PD ++ C GGGSN G+ F+ E + A TA P G ++Y D G T ++ H++ + GL Y G+ P + + E ++ I +E R EGIIPA E+ HA+A ++ Sbjct: 141 HGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVA-----VQTGSKTLKD----------AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQT--IESHSI----------SAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALK 386
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BORPE (Tryptophan synthase beta chain OS=Bordetella pertussis GN=trpB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11 Identity = 72/263 (27.38%), Postives = 107/263 (40.68%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A + +G+ C V+ ++ M+ GA V P S +L A++EA TN + T Y +G+V V QTVIG+EC+ QM E +G PD ++ GGGSN G+ P+I + N ++ V A E + A G G + + G + AG L Y G+ P + + + E I E R EGI+PA E+ HAIA ++ Sbjct: 120 HGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGATVVPVDSGSC---------------TLKDALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMPEVIGRQPDYVVAAVGGGSNAMGIFHPYIPYE-NVRLIGVEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAG-LDYPGVGPEHAWLKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVK 365 The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 296
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bpback to top |