EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_FRATO (Tryptophan synthase beta chain OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 74/272 (27.21%), Postives = 110/272 (40.44%), Query Frame = 2 
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA---------GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L  L C V+      +++      M+  GA+V P  S                  +L  A +EA  + +A  +   Y LG+          V   Q +IGEE  +QM A  G  PD +I C GGGSN  G+   FI EK     N  +  VEP       KG+   + G            GM   +  ++ G       I A GL +  + P  +H+  +   +  S    E         + EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEK-----NVKLIGVEPAG-----KGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISA-GLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALK 359
[Close]
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_FRATN (Tryptophan synthase beta chain OS=Francisella tularensis subsp. novicida (strain U112) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 74/272 (27.21%), Postives = 110/272 (40.44%), Query Frame = 2 
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA---------GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L  L C V+      +++      M+  GA+V P  S                  +L  A +EA  + +A  +   Y LG+          V   Q +IGEE  +Q+ A  G  PD +I C GGGSN  G+   FI EK     N  +  VEP       KG+   + G            GM   +  ++ G       I AG L +  + P  +H+  +   E  S    E         + EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQILAKEGRLPDAVIACVGGGSNAIGMFADFIDEK-----NVKLIGVEPAG-----KGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAG-LDFPSVGPQHAHLLAIGRAEYASATDDEALDAFKLLCKKEGIIPALESSHALAHALK 359
[Close]
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_FRATM (Tryptophan synthase beta chain OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 74/272 (27.21%), Postives = 110/272 (40.44%), Query Frame = 2 
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA---------GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L  L C V+      +++      M+  GA+V P  S                  +L  A +EA  + +A  +   Y LG+          V   Q +IGEE  +QM A  G  PD +I C GGGSN  G+   FI EK     N  +  VEP       KG+   + G            GM   +  ++ G       I A GL +  + P  +H+  +   +  S    E         + EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEK-----NVKLIGVEPAG-----KGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISA-GLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALK 359
[Close]
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_FRATH (Tryptophan synthase beta chain OS=Francisella tularensis subsp. holarctica (strain LVS) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 74/272 (27.21%), Postives = 110/272 (40.44%), Query Frame = 2 
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA---------GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L  L C V+      +++      M+  GA+V P  S                  +L  A +EA  + +A  +   Y LG+          V   Q +IGEE  +QM A  G  PD +I C GGGSN  G+   FI EK     N  +  VEP       KG+   + G            GM   +  ++ G       I A GL +  + P  +H+  +   +  S    E         + EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEK-----NVKLIGVEPAG-----KGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISA-GLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALK 359
[Close]
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_FRATF (Tryptophan synthase beta chain OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 74/272 (27.21%), Postives = 110/272 (40.44%), Query Frame = 2 
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA---------GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L  L C V+      +++      M+  GA+V P  S                  +L  A +EA  + +A  +   Y LG+          V   Q +IGEE  +QM A  G  PD +I C GGGSN  G+   FI EK     N  +  VEP       KG+   + G            GM   +  ++ G       I A GL +  + P  +H+  +   +  S    E         + EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEK-----NVKLIGVEPAG-----KGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISA-GLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALK 359
[Close]
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_FRAT1 (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 74/272 (27.21%), Postives = 110/272 (40.44%), Query Frame = 2 
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA---------GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A +C+L  L C V+      +++      M+  GA+V P  S                  +L  A +EA  + +A  +   Y LG+          V   Q +IGEE  +QM A  G  PD +I C GGGSN  G+   FI EK     N  +  VEP       KG+   + G            GM   +  ++ G       I A GL +  + P  +H+  +   +  S    E         + EGIIPA E++HA+A  ++
Sbjct:  114 HGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS---------------GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEK-----NVKLIGVEPAG-----KGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISA-GLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALK 359
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_FRATO7.790e-1127.21Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRATN7.790e-1127.21Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRATM7.790e-1127.21Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRATH7.790e-1127.21Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRATF7.790e-1127.21Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRAT17.790e-1127.21Tryptophan synthase beta chain OS=Francisella tula... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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