EY656642
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.857e-18 Identity = 81/262 (30.92%), Postives = 117/262 (44.66%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + +LFGL CEV+ +++ M+ GAKV+ S +L AI+ A TN D T Y +GSV+ V Q +IGEE KQ ++A G PD ++ C GGGSN G+ +PFI++ KL G + P +LTKG G GM + G P + GL Y G+ P S++ E ++ E + + + EGIIPA E++HA+A Sbjct: 112 HGVATATAAALFGLECEVFMGAEDVERQALNVFRMKILGAKVNSVKS---------------GTNTLKDAINAAMRDWVTNIDNTYYVIGSVMGPHPYPTIVKDFQKIIGEEARKQILKAEGRLPDYVVACVGGGSNSMGIFYPFIKDEGVKLIGVEAAGLGIDTPMHAATLTKG----SVGIIHGMMTYVLQDEDG-QITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVA 353
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP2 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18 Identity = 82/268 (30.60%), Postives = 114/268 (42.54%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL C V+ D++ L M+ GA+V P S +L A++EA TN DT YC+G+V V Q VIG+E Q MEA G PD +I C GGGSN GL PF+ E ++ + A P + G Y DT G + + H++ + GL Y G+ P + ++++ +E +S TE R EGIIPA E HA+A Sbjct: 126 HGVATATMCAKFGLQCVVYMGAVDVDRQQPNVLRMKALGAEVRPVTS---------------GAATLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVRAQIMEAEGRLPDSLIACIGGGSNAMGLFHPFLDDSSVAIYGVEAAGHGLSKLHAASIAGGKPGVLHGNRTYLLMDTDGQ--IQEAHSI----------SAGLDYPGIGPEHAWLHDVGRVEFMSATDTEALDAFKLCCRLEGIIPALEPAHALA 366
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17 Identity = 79/272 (29.04%), Postives = 122/272 (44.85%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHA--GGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787 H A A + ++FG+ CE++ ++ M+ GAKV + +T R +L A++EA TN +T Y +GSV+ V Q VIG+E +Q +E G PD ++ C GGGSN G+ +PFI +K K+ V A E + G GM + G P+H+ GL Y G+ P +++ E+ E + E + +RTEGIIPA E+ HA+A ++ A + E Sbjct: 112 HGVATATAAAMFGMECEIFMGEEDIKRQALNVFRMKLLGAKV----TAVTSGTR-----------TLKDAVNEAIRDWVTNIETTFYVIGSVVGPHPYPTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFIEDK-GVKLVGVEAAGEGIETGKHASAMAKGSVGVLHGMMTYLLQDEEGKIL---PVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDE 364
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_HELHP (Tryptophan synthase beta chain OS=Helicobacter hepaticus GN=trpB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.265e-17 Identity = 84/288 (29.17%), Postives = 129/288 (44.79%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINP------------VIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRL 805 H A A +C+ GL CE++ ++ M+ +GAKVH S G K L+ A++EA E + + D+ Y LGS L V Q+VI +E KQ +A PDI++ C GGGSN G +++E+ I IR A + +G + D G L H++ + GL Y G+ P L+H+YE+ +E S E + FA+ EGIIPA E++HA+A IR CK+++ +++ Sbjct: 127 HGLATAAACARLGLECEIFMGEIDIARQRPNVFNMELFGAKVHSVSS-----GSKTLKD----------AVNEALREWSKRSDDSFYVLGSALGPYPYPDIVRDLQSVISKELKKQTKAYFSSLPDILVACVGGGSNAMGFFTHYLKEERVRLIGVEAGGIGDKEGENAIRINTINASEGIAQGYKSLFLQDKDGQ--LSDTHSI----------SAGLDYAGIGPQLAHLYEVGRVEFQSATDKEALEALSFFAQYEGIIPALESSHALAAVIR---LCKDIKGKKI 384
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_OCEIH (Tryptophan synthase beta chain OS=Oceanobacillus iheyensis GN=trpB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.570e-17 Identity = 80/262 (30.53%), Postives = 118/262 (45.04%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDF--IPDPIH-AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A CSL GL C V+ ++ M+ GA+V + + S G+L A++EA N DT Y +GSV+ V Q+VIG+E +Q M+ +G PD ++ C GGGSN G+ +PFI +K + VE TK A G + GM + L D I + + GL Y G+ P SH+++ + SI E + ++TEGIIPA E+ HA++ Sbjct: 120 HGVATATVCSLLGLECIVFMGEEDIKRQKLNVFRMELLGAEV--------------VSVSQGS-GTLKDAVNEALRYWVNNVNDTHYIIGSVVGPHPFPKIVRDFQSVIGKETKEQSMKKIGSLPDAVVACVGGGSNAMGMFYPFIDDK-----EVTLFGVEAAGAGLDTKQHAATLTGGSPGMLHGTFTYLLQDDCGQIEEAFSISAGLDYPGIGPEHSHLHQTKRVTYSSITDEEALEAFQLLSKTEGIIPALESAHAVS 361
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.274e-17 Identity = 76/259 (29.34%), Postives = 113/259 (43.63%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + ++FG+ CE++ ++ M+ GAKV P S G+L A++EA TN DT Y +GSV+ V Q VIG+E +Q ++ G PD +I C GGGSN G+ +PFI +K K+ V A E + G GM + G +P + GL Y G+ P + + E + + E + ++TEGIIPA E+ HA+A Sbjct: 112 HGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLLGAKVTPVKS---------------GTGTLKDAVNEAIRDWVTNINDTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDK-EVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGR-IMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALA 353
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB1_AQUAE (Tryptophan synthase beta chain 1 OS=Aquifex aeolicus GN=trpB1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17 Identity = 81/288 (28.12%), Postives = 131/288 (45.49%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHD---FIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRLSDGMCAMDI 832 H A A + +LFGL C V+ +++ M+ GAKV +I ++G + L+ AI+EA TN + T Y +GSV+ V Q+VIG E +Q ++ G PD I+ C GGGSN G+ +PF+ +K + VE + T A G + G+ MK + L + P + GL Y G+ P + +E+ + + E + ARTEGIIPA E+ HA+ ++ E+ ++ DG+ +++ Sbjct: 118 HGVATATASALFGLECVVYMGEEDAERQALNVFRMKLLGAKV-----EIVKSGSRTLKD----------AINEALRDWVTNVESTHYVIGSVVGPHPFPMIVRDFQSVIGRETKEQILQKEGRLPDAIVACVGGGSNAMGIFYPFVEDK-----GVQLIGVEAGGYGLETGQHAASICGGSVGILHGMKSYFLQDEEGQIQPTHSISAGLDYPGVGPEHALFHEIKRAKYTTATDEEALEGFKLLARTEGIIPALESAHAV-------IKAVEVARELGKDGIVVINL 378
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-16 Identity = 79/259 (30.50%), Postives = 111/259 (42.86%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL C ++ + ++ M+ GAKV P + +L A SEA TN +T Y LGSV V VIGEE KQ +EA G +PD+++ C GGGSN GL PFI ++ + ++ V A + + G G L+ + G I A GL Y G+ P S++ E+ E ++ E + EGIIPA ET HA+A Sbjct: 137 HGVATATVCARFGLECIIYMGQEDMRRQSLNVFRMKLLGAKVRPVTA---------------GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDR-SVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISA-GLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALA 378
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLOBA (Tryptophan synthase beta chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=trpB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-16 Identity = 78/273 (28.57%), Postives = 118/273 (43.22%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTA-WPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787 H ALA + + FGL CE+ ++ M+ GAKV P G K L+ A+ A + A N D+ YC+GS L V Q V+G E Q E G PD++ C GGGSN G+ PF+ E ++ I +EP L + +G+ M + + P P++ A GL Y + P + + EL ++ I E + + +R EGIIPA E++HA+A ++ A K+ Sbjct: 124 HGVALATAAAFFGLECEIHMGEVDIAKQAPNVTRMKILGAKVVP-----VTHGLKTLKE----------AVDSAFDSYAKNYKDSIYCIGSALGPHPFPLMVRDFQAVVGYEAKDQFKEMTGFLPDVVTACVGGGSNAAGMFIPFLEEPVD------IIGIEPLGRGEKLGDHAASMKYGEKGVMHGFESIMLKDKNGNPAPVYSIASGLDYPSVGPEHAFLRELGRVDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAKEMKQ 375
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.117e-16 Identity = 84/269 (31.23%), Postives = 115/269 (42.75%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAW----------PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL C ++ +++ L M+ GA+V P AG G+L A SEA TN +T Y LGSV V VIG E +Q +E G PDI++ C GGGSN GL F+ E P +R + A +LTKG + G G + G I AG L Y G+ P S++ ++ E S+ TE ++ A+ EGI+PA ET HA+A Sbjct: 132 HGVATATVCARFGLQCVIYMGVQDMERQRLNVLRMRLLGAEVAP-----VSAGT----------GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEE-------PQVRLIGVEAAGQGLDTGHHAATLTKG----EVGVLHGAMSYLLQDADGQVVEAHSISAG-LDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALA 373 The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 296
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Sequences
The
following sequences are available for this feature:
EST sequence >EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bpback to top |