EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.857e-18
Identity = 81/262 (30.92%), Postives = 117/262 (44.66%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + +LFGL CEV+      +++      M+  GAKV+   S                  +L  AI+ A     TN D T Y +GSV+        V   Q +IGEE  KQ ++A G  PD ++ C GGGSN  G+ +PFI++   KL G     +    P    +LTKG      G   GM   +     G    P    + GL Y G+ P  S++ E       ++   E  +  +  +  EGIIPA E++HA+A
Sbjct:  112 HGVATATAAALFGLECEVFMGAEDVERQALNVFRMKILGAKVNSVKS---------------GTNTLKDAINAAMRDWVTNIDNTYYVIGSVMGPHPYPTIVKDFQKIIGEEARKQILKAEGRLPDYVVACVGGGSNSMGIFYPFIKDEGVKLIGVEAAGLGIDTPMHAATLTKG----SVGIIHGMMTYVLQDEDG-QITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVA 353          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP2 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18
Identity = 82/268 (30.60%), Postives = 114/268 (42.54%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C V+      D++    L M+  GA+V P  S                  +L  A++EA     TN  DT YC+G+V         V   Q VIG+E   Q MEA G  PD +I C GGGSN  GL  PF+          E     ++ +  A      P +  G   Y   DT G   + + H++          + GL Y G+ P  + ++++  +E +S   TE         R EGIIPA E  HA+A
Sbjct:  126 HGVATATMCAKFGLQCVVYMGAVDVDRQQPNVLRMKALGAEVRPVTS---------------GAATLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVRAQIMEAEGRLPDSLIACIGGGSNAMGLFHPFLDDSSVAIYGVEAAGHGLSKLHAASIAGGKPGVLHGNRTYLLMDTDGQ--IQEAHSI----------SAGLDYPGIGPEHAWLHDVGRVEFMSATDTEALDAFKLCCRLEGIIPALEPAHALA 366          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 79/272 (29.04%), Postives = 122/272 (44.85%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHA--GGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787
            H  A A + ++FG+ CE++       ++      M+  GAKV    + +T   R           +L  A++EA     TN +T  Y +GSV+        V   Q VIG+E  +Q +E  G  PD ++ C GGGSN  G+ +PFI +K   K+  V  A E          +     G   GM   +     G      P+H+   GL Y G+ P  +++ E+   E +     E     +  +RTEGIIPA E+ HA+A  ++ A +  E
Sbjct:  112 HGVATATAAAMFGMECEIFMGEEDIKRQALNVFRMKLLGAKV----TAVTSGTR-----------TLKDAVNEAIRDWVTNIETTFYVIGSVVGPHPYPTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFIEDK-GVKLVGVEAAGEGIETGKHASAMAKGSVGVLHGMMTYLLQDEEGKIL---PVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDE 364          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_HELHP (Tryptophan synthase beta chain OS=Helicobacter hepaticus GN=trpB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.265e-17
Identity = 84/288 (29.17%), Postives = 129/288 (44.79%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINP------------VIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRL 805
            H  A A +C+  GL CE++       ++      M+ +GAKVH   S     G K L+           A++EA  E +  + D+ Y LGS L        V   Q+VI +E  KQ +A     PDI++ C GGGSN  G    +++E+    I               IR     A   + +G  +    D  G   L   H++          + GL Y G+ P L+H+YE+  +E  S    E  +    FA+ EGIIPA E++HA+A  IR    CK+++ +++
Sbjct:  127 HGLATAAACARLGLECEIFMGEIDIARQRPNVFNMELFGAKVHSVSS-----GSKTLKD----------AVNEALREWSKRSDDSFYVLGSALGPYPYPDIVRDLQSVISKELKKQTKAYFSSLPDILVACVGGGSNAMGFFTHYLKEERVRLIGVEAGGIGDKEGENAIRINTINASEGIAQGYKSLFLQDKDGQ--LSDTHSI----------SAGLDYAGIGPQLAHLYEVGRVEFQSATDKEALEALSFFAQYEGIIPALESSHALAAVIR---LCKDIKGKKI 384          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_OCEIH (Tryptophan synthase beta chain OS=Oceanobacillus iheyensis GN=trpB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.570e-17
Identity = 80/262 (30.53%), Postives = 118/262 (45.04%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDF--IPDPIH-AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  CSL GL C V+       ++      M+  GA+V              + +   S G+L  A++EA      N  DT Y +GSV+        V   Q+VIG+E  +Q M+ +G  PD ++ C GGGSN  G+ +PFI +K        +  VE       TK   A   G + GM      + L  D   I +    + GL Y G+ P  SH+++   +   SI   E  +     ++TEGIIPA E+ HA++
Sbjct:  120 HGVATATVCSLLGLECIVFMGEEDIKRQKLNVFRMELLGAEV--------------VSVSQGS-GTLKDAVNEALRYWVNNVNDTHYIIGSVVGPHPFPKIVRDFQSVIGKETKEQSMKKIGSLPDAVVACVGGGSNAMGMFYPFIDDK-----EVTLFGVEAAGAGLDTKQHAATLTGGSPGMLHGTFTYLLQDDCGQIEEAFSISAGLDYPGIGPEHSHLHQTKRVTYSSITDEEALEAFQLLSKTEGIIPALESAHAVS 361          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.274e-17
Identity = 76/259 (29.34%), Postives = 113/259 (43.63%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + ++FG+ CE++       ++      M+  GAKV P  S                 G+L  A++EA     TN  DT Y +GSV+        V   Q VIG+E  +Q ++  G  PD +I C GGGSN  G+ +PFI +K   K+  V  A E          +     G   GM   +     G   +P    + GL Y G+ P  + + E    + +     E     +  ++TEGIIPA E+ HA+A
Sbjct:  112 HGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLLGAKVTPVKS---------------GTGTLKDAVNEAIRDWVTNINDTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDK-EVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGR-IMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALA 353          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB1_AQUAE (Tryptophan synthase beta chain 1 OS=Aquifex aeolicus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17
Identity = 81/288 (28.12%), Postives = 131/288 (45.49%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHD---FIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRLSDGMCAMDI 832
            H  A A + +LFGL C V+      +++      M+  GAKV     +I ++G + L+           AI+EA     TN + T Y +GSV+        V   Q+VIG E  +Q ++  G  PD I+ C GGGSN  G+ +PF+ +K        +  VE   +   T    A   G + G+   MK + L  +     P    + GL Y G+ P  +  +E+   +  +    E  +     ARTEGIIPA E+ HA+       ++  E+ ++   DG+  +++
Sbjct:  118 HGVATATASALFGLECVVYMGEEDAERQALNVFRMKLLGAKV-----EIVKSGSRTLKD----------AINEALRDWVTNVESTHYVIGSVVGPHPFPMIVRDFQSVIGRETKEQILQKEGRLPDAIVACVGGGSNAMGIFYPFVEDK-----GVQLIGVEAGGYGLETGQHAASICGGSVGILHGMKSYFLQDEEGQIQPTHSISAGLDYPGVGPEHALFHEIKRAKYTTATDEEALEGFKLLARTEGIIPALESAHAV-------IKAVEVARELGKDGIVVINL 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-16
Identity = 79/259 (30.50%), Postives = 111/259 (42.86%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++  +    ++      M+  GAKV P  +                  +L  A SEA     TN +T  Y LGSV         V     VIGEE  KQ +EA G +PD+++ C GGGSN  GL  PFI ++ + ++  V  A +          +     G   G   L+   + G       I A GL Y G+ P  S++ E+   E  ++   E        +  EGIIPA ET HA+A
Sbjct:  137 HGVATATVCARFGLECIIYMGQEDMRRQSLNVFRMKLLGAKVRPVTA---------------GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDR-SVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISA-GLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALA 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLOBA (Tryptophan synthase beta chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-16
Identity = 78/273 (28.57%), Postives = 118/273 (43.22%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTA-WPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787
            H  ALA + + FGL CE+        ++      M+  GAKV P        G K L+           A+  A +  A N  D+ YC+GS L        V   Q V+G E   Q  E  G  PD++  C GGGSN  G+  PF+ E ++      I  +EP      L     +  +G+   M     +     +  P P++  A GL Y  + P  + + EL  ++   I   E  +   + +R EGIIPA E++HA+A  ++ A   K+
Sbjct:  124 HGVALATAAAFFGLECEIHMGEVDIAKQAPNVTRMKILGAKVVP-----VTHGLKTLKE----------AVDSAFDSYAKNYKDSIYCIGSALGPHPFPLMVRDFQAVVGYEAKDQFKEMTGFLPDVVTACVGGGSNAAGMFIPFLEEPVD------IIGIEPLGRGEKLGDHAASMKYGEKGVMHGFESIMLKDKNGNPAPVYSIASGLDYPSVGPEHAFLRELGRVDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAKEMKQ 375          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.117e-16
Identity = 84/269 (31.23%), Postives = 115/269 (42.75%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAW----------PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++      +++    L M+  GA+V P       AG           G+L  A SEA     TN +T  Y LGSV         V     VIG E  +Q +E  G  PDI++ C GGGSN  GL   F+ E       P +R +   A            +LTKG    + G   G    +     G       I AG L Y G+ P  S++ ++   E  S+  TE     ++ A+ EGI+PA ET HA+A
Sbjct:  132 HGVATATVCARFGLQCVIYMGVQDMERQRLNVLRMRLLGAEVAP-----VSAGT----------GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEE-------PQVRLIGVEAAGQGLDTGHHAATLTKG----EVGVLHGAMSYLLQDADGQVVEAHSISAG-LDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALA 373          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_CLOAB3.857e-1830.92Tryptophan synthase beta chain OS=Clostridium acet... [more]
TRPB_RHOP28.593e-1830.60Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_THETN1.122e-1729.04Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_HELHP3.265e-1729.17Tryptophan synthase beta chain OS=Helicobacter hep... [more]
TRPB_OCEIH5.570e-1730.53Tryptophan synthase beta chain OS=Oceanobacillus i... [more]
TRPB_THEPX7.274e-1729.34Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB1_AQUAE9.501e-1728.13Tryptophan synthase beta chain 1 OS=Aquifex aeolic... [more]
TRPB_PROMA1.621e-1630.50Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_CLOBA1.621e-1628.57Tryptophan synthase beta chain OS=Clostridium botu... [more]
TRPB_THEEB2.117e-1631.23Tryptophan synthase beta chain OS=Thermosynechococ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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