EY656642
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLOBB (Tryptophan synthase beta chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=trpB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.117e-16 Identity = 78/273 (28.57%), Postives = 118/273 (43.22%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTA-WPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787 H ALA + + FGL CE+ ++ M+ GAKV P G K L+ A+ A + A N D+ YC+GS L V Q V+G E Q E G PD++ C GGGSN G+ PF+ E ++ I +EP L + +G+ M + + P P++ A GL Y + P + + EL ++ I E + + +R EGIIPA E++HA+A ++ A K+ Sbjct: 124 HGVALATAAAFFGLECEIHMGEVDIAKQAPNVTRMKILGAKVVP-----VTHGLKTLKE----------AVDSAFDSYAKNYKDSIYCIGSALGPHPFPLMVRDFQAVVGYEAKDQFKEMTGFLPDVVTACVGGGSNAAGMFIPFLEEPVD------IIGIEPLGRGEKLGDHAASMKYGEKGVMHGFESIMLKDKNGDPAPVYSIASGLDYPSVGPEHAFLRELGRVDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAEEMKQ 375
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRASO (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain ORS278) GN=trpB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16 Identity = 79/272 (29.04%), Postives = 118/272 (43.38%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766 H A A C+ FGL+C V+ +++ L M+ GAKV P ++G + L+ A++EA TN +T YC+G+V V Q+VIG+E QM EA G PD ++ C GGGSN GL PF+ E + + A P + G Y D G + + H++ + GL Y G+ P S ++E + +S E + +R EGIIPA E HA+A ++ Sbjct: 126 HGVATATLCARFGLDCVVYMGAVDVERQQPNVLRMEMLGAKVIP-----VQSGARTLKD----------AMNEALRDWVTNVHNTFYCIGTVAGPHPYPMMVRDFQSVIGQETRTQMQEAEGRLPDSLVACIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDDDGQ--IAEAHSI----------SAGLDYPGIGPEHSWLHEAKRVTYLSATDDEALDAFLLLSRLEGIIPALEPAHAVAKVMQ 370
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 78/268 (29.10%), Postives = 114/268 (42.54%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL C V+ +++ L M+ GA+V P S +L A++EA TN DT YC+G+V V Q VIG+E +Q M+A G PD ++ C GGGSN GL PF+ E ++ + A P + G Y D G + + H++ + GL Y G+ P S ++++ + +S TE R EGIIPA E +HA+A Sbjct: 126 HGVATATMCAKFGLECVVFMGAVDVERQQPNVLRMKALGAEVRPVTS---------------GANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDKLHAASIAGGKPGVLHGNRTYLLMDADGQ--IEEAHSI----------SAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALA 366
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 78/268 (29.10%), Postives = 114/268 (42.54%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL C V+ +++ L M+ GA+V P S +L A++EA TN DT YC+G+V V Q VIG+E +Q M+A G PD ++ C GGGSN GL PF+ E ++ + A P + G Y D G + + H++ + GL Y G+ P S ++++ + +S TE R EGIIPA E +HA+A Sbjct: 126 HGVATATMCAKFGLECVVFMGAVDVERQQPNVLRMKALGAEVRPVTS---------------GANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDKLHAASIAGGKPGVLHGNRTYLLMDADGQ--IEEAHSI----------SAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALA 366
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 80/259 (30.89%), Postives = 112/259 (43.24%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL C ++ + +++ M+ GAKV Q + +L A SEA TN + T Y LGSV V +VIGEE +Q EA G +PD+++ C GGGSN GL FI E L+ K+ V A + + G G L+ + G I AG L Y G+ P S++ E+ E +++ E ++ EGIIPA ET HA A Sbjct: 137 HGVATATVCARFGLECVIYMGQEDMERQALNVFRMKLLGAKV---------------QSVTAGTATLKDATSEAIRDWVTNVESTHYILGSVAGPHPYPMLVRDFHSVIGEETKQQCKEAFGRSPDVLLACVGGGSNAMGLFHSFI-EDLSVKMIGVEAAGDGVNTKRHAATITQGSVGVLHGAMSLLLQDSDGQVQEAHSISAG-LDYPGVGPEHSYLNEIGRAEYVAVTDKEALNALELVSKLEGIIPALETAHAFA 378
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJR (Tryptophan synthase beta chain OS=Campylobacter jejuni (strain RM1221) GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + +L GL CE++ ++ M+ GAK+H ++G K L+ + A + A D K Y +GS + V+ Q++IG+EC Q++ + + D II GGGSN G+ + FI++ KL G + P +L KG G GM + LG+ P+H + GL Y G+ PL + ++E + +I EC Q + EGII A E++HA+A Sbjct: 112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJJ (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + +L GL CE++ ++ M+ GAK+H ++G K L+ + A + A D K Y +GS + V+ Q++IG+EC Q++ + + D II GGGSN G+ + FI++ KL G + P +L KG G GM + LG+ P+H + GL Y G+ PL + ++E + +I EC Q + EGII A E++HA+A Sbjct: 112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJE (Tryptophan synthase beta chain OS=Campylobacter jejuni GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + +L GL CE++ ++ M+ GAK+H ++G K L+ + A + A D K Y +GS + V+ Q++IG+EC Q++ + + D II GGGSN G+ + FI++ KL G + P +L KG G GM + LG+ P+H + GL Y G+ PL + ++E + +I EC Q + EGII A E++HA+A Sbjct: 112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJ8 (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A + +L GL CE++ ++ M+ GAK+H ++G K L+ + A + A D K Y +GS + V+ Q++IG+EC Q++ + + D II GGGSN G+ + FI++ KL G + P +L KG G GM + LG+ P+H + GL Y G+ PL + ++E + +I EC Q + EGII A E++HA+A Sbjct: 112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRASB (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=trpB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16 Identity = 81/268 (30.22%), Postives = 115/268 (42.91%), Query Frame = 2 Query: 2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754 H A A C+ FGL+C V+ +++ L M+ GAKV P ++G + L+ A++EA TN DT YC+G+V V Q+VIG+E QM EA G PD ++ C GGGSN GL PF+ E + + A P + G Y D G + + H++ + GL Y G+ P S ++E + +S E +R EGIIPA E HAIA Sbjct: 126 HGVATATLCARFGLDCVVYMGAVDVERQQPNVLRMEMLGAKVVP-----VQSGARTLKD----------AMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSVIGDETRVQMQEAEGRLPDSLVACIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDEDGQ--IAEAHSI----------SAGLDYPGIGPEHSWLFEAKRVTYLSATDDEALAAFQLLSRLEGIIPALEPAHAIA 366 The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 296
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Sequences
The
following sequences are available for this feature:
EST sequence >EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bpback to top |