EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLOBB (Tryptophan synthase beta chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=trpB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.117e-16
Identity = 78/273 (28.57%), Postives = 118/273 (43.22%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTA-WPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKE 787
            H  ALA + + FGL CE+        ++      M+  GAKV P        G K L+           A+  A +  A N  D+ YC+GS L        V   Q V+G E   Q  E  G  PD++  C GGGSN  G+  PF+ E ++      I  +EP      L     +  +G+   M     +     +  P P++  A GL Y  + P  + + EL  ++   I   E  +   + +R EGIIPA E++HA+A  ++ A   K+
Sbjct:  124 HGVALATAAAFFGLECEIHMGEVDIAKQAPNVTRMKILGAKVVP-----VTHGLKTLKE----------AVDSAFDSYAKNYKDSIYCIGSALGPHPFPLMVRDFQAVVGYEAKDQFKEMTGFLPDVVTACVGGGSNAAGMFIPFLEEPVD------IIGIEPLGRGEKLGDHAASMKYGEKGVMHGFESIMLKDKNGDPAPVYSIASGLDYPSVGPEHAFLRELGRVDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAEEMKQ 375          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRASO (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain ORS278) GN=trpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 79/272 (29.04%), Postives = 118/272 (43.38%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A  C+ FGL+C V+      +++    L M+  GAKV P      ++G + L+           A++EA     TN  +T YC+G+V         V   Q+VIG+E   QM EA G  PD ++ C GGGSN  GL  PF+          E     +  +  A      P +  G   Y   D  G   + + H++          + GL Y G+ P  S ++E   +  +S    E     +  +R EGIIPA E  HA+A  ++
Sbjct:  126 HGVATATLCARFGLDCVVYMGAVDVERQQPNVLRMEMLGAKVIP-----VQSGARTLKD----------AMNEALRDWVTNVHNTFYCIGTVAGPHPYPMMVRDFQSVIGQETRTQMQEAEGRLPDSLVACIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDDDGQ--IAEAHSI----------SAGLDYPGIGPEHSWLHEAKRVTYLSATDDEALDAFLLLSRLEGIIPALEPAHAVAKVMQ 370          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 78/268 (29.10%), Postives = 114/268 (42.54%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C V+      +++    L M+  GA+V P  S                  +L  A++EA     TN  DT YC+G+V         V   Q VIG+E  +Q M+A G  PD ++ C GGGSN  GL  PF+          E     ++ +  A      P +  G   Y   D  G   + + H++          + GL Y G+ P  S ++++  +  +S   TE         R EGIIPA E +HA+A
Sbjct:  126 HGVATATMCAKFGLECVVFMGAVDVERQQPNVLRMKALGAEVRPVTS---------------GANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDKLHAASIAGGKPGVLHGNRTYLLMDADGQ--IEEAHSI----------SAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALA 366          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 78/268 (29.10%), Postives = 114/268 (42.54%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C V+      +++    L M+  GA+V P  S                  +L  A++EA     TN  DT YC+G+V         V   Q VIG+E  +Q M+A G  PD ++ C GGGSN  GL  PF+          E     ++ +  A      P +  G   Y   D  G   + + H++          + GL Y G+ P  S ++++  +  +S   TE         R EGIIPA E +HA+A
Sbjct:  126 HGVATATMCAKFGLECVVFMGAVDVERQQPNVLRMKALGAEVRPVTS---------------GANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDKLHAASIAGGKPGVLHGNRTYLLMDADGQ--IEEAHSI----------SAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALA 366          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 80/259 (30.89%), Postives = 112/259 (43.24%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++  +   +++      M+  GAKV               Q   +   +L  A SEA     TN + T Y LGSV         V    +VIGEE  +Q  EA G +PD+++ C GGGSN  GL   FI E L+ K+  V  A +          +     G   G   L+   + G       I AG L Y G+ P  S++ E+   E +++   E        ++ EGIIPA ET HA A
Sbjct:  137 HGVATATVCARFGLECVIYMGQEDMERQALNVFRMKLLGAKV---------------QSVTAGTATLKDATSEAIRDWVTNVESTHYILGSVAGPHPYPMLVRDFHSVIGEETKQQCKEAFGRSPDVLLACVGGGSNAMGLFHSFI-EDLSVKMIGVEAAGDGVNTKRHAATITQGSVGVLHGAMSLLLQDSDGQVQEAHSISAG-LDYPGVGPEHSYLNEIGRAEYVAVTDKEALNALELVSKLEGIIPALETAHAFA 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJR (Tryptophan synthase beta chain OS=Campylobacter jejuni (strain RM1221) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + +L GL CE++       ++      M+  GAK+H       ++G K L+             +  A + A   D K   Y +GS +        V+  Q++IG+EC  Q++ + +  D II   GGGSN  G+ + FI++   KL G     +    P    +L KG      G   GM   +    LG+     P+H  + GL Y G+ PL + ++E    +  +I   EC Q      + EGII A E++HA+A
Sbjct:  112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJJ (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + +L GL CE++       ++      M+  GAK+H       ++G K L+             +  A + A   D K   Y +GS +        V+  Q++IG+EC  Q++ + +  D II   GGGSN  G+ + FI++   KL G     +    P    +L KG      G   GM   +    LG+     P+H  + GL Y G+ PL + ++E    +  +I   EC Q      + EGII A E++HA+A
Sbjct:  112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJE (Tryptophan synthase beta chain OS=Campylobacter jejuni GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + +L GL CE++       ++      M+  GAK+H       ++G K L+             +  A + A   D K   Y +GS +        V+  Q++IG+EC  Q++ + +  D II   GGGSN  G+ + FI++   KL G     +    P    +L KG      G   GM   +    LG+     P+H  + GL Y G+ PL + ++E    +  +I   EC Q      + EGII A E++HA+A
Sbjct:  112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJ8 (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 75/265 (28.30%), Postives = 118/265 (44.53%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK---YCLGSVLNH------VLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + +L GL CE++       ++      M+  GAK+H       ++G K L+             +  A + A   D K   Y +GS +        V+  Q++IG+EC  Q++ + +  D II   GGGSN  G+ + FI++   KL G     +    P    +L KG      G   GM   +    LG+     P+H  + GL Y G+ PL + ++E    +  +I   EC Q      + EGII A E++HA+A
Sbjct:  112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKE------------ATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKG----KTGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRASB (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 81/268 (30.22%), Postives = 115/268 (42.91%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL+C V+      +++    L M+  GAKV P      ++G + L+           A++EA     TN  DT YC+G+V         V   Q+VIG+E   QM EA G  PD ++ C GGGSN  GL  PF+          E     +  +  A      P +  G   Y   D  G   + + H++          + GL Y G+ P  S ++E   +  +S    E        +R EGIIPA E  HAIA
Sbjct:  126 HGVATATLCARFGLDCVVYMGAVDVERQQPNVLRMEMLGAKVVP-----VQSGARTLKD----------AMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSVIGDETRVQMQEAEGRLPDSLVACIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDEDGQ--IAEAHSI----------SAGLDYPGIGPEHSWLFEAKRVTYLSATDDEALAAFQLLSRLEGIIPALEPAHAIA 366          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_CLOBB2.117e-1628.57Tryptophan synthase beta chain OS=Clostridium botu... [more]
TRPB_BRASO2.764e-1629.04Tryptophan synthase beta chain OS=Bradyrhizobium s... [more]
TRPB_RHOPT3.610e-1629.10Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_RHOPA3.610e-1629.10Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_PROM43.610e-1630.89Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_CAMJR3.610e-1628.30Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJJ3.610e-1628.30Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJE3.610e-1628.30Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJ83.610e-1628.30Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_BRASB3.610e-1630.22Tryptophan synthase beta chain OS=Bradyrhizobium s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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