EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 77/277 (27.80%), Postives = 126/277 (45.49%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKL--------------NGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A + +L G+  +++      +++      M+  GA V P        G K L+           AI+EA  +  AT   + Y +GSV+        V   Q+VIG E  +Q +EA G+ PD+I+ C GGGSN  G+ +PF+++K               +GK +  + A E      +  G+ +Y   D  G   +   H++          A GL Y G+ P  +++ E    E +++   E  +   + +RTEGIIPA E+ HA+A  I+
Sbjct:  110 HGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIP-----VHTGSKTLKD----------AINEALRDWVATFEYSHYLIGSVVGPHPYPIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKSVRLIGVEAGGKGIESGKHSASLNAGE----IGVFHGMLSYFLQDEEGQ--IRTTHSI----------APGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIK 355          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.715e-16
Identity = 76/259 (29.34%), Postives = 113/259 (43.63%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + ++FG+ CE++       ++      M+  GAKV P        G K L+           A++EA     TN D T Y +GSV+        V   Q VIG+E  +Q ++  G  PD +I C GGGSN  G+ +PFI +K   K+  V  A E          +     G   GM   +     G   +P    + GL Y G+ P  + + E    + +     E     +  ++TEGIIPA E+ HA+A
Sbjct:  112 HGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLLGAKVTP-----VTTGTKTLKD----------AVNEAIRDWVTNIDNTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDK-EVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGR-IMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALA 353          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRFU (Tryptophan synthase beta chain 1 OS=Pyrococcus furiosus GN=trpB1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.715e-16
Identity = 80/284 (28.17%), Postives = 132/284 (46.48%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAA-EVAATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPD------PIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRL 805
            H  A A + +L G+  +++      +++      M+  GA V P       +G + L+           AI+EA  +  AT   T Y +GSV+        V   Q+VIG E   Q +EA G+ PD+I+ C GGGSN  G+ +PF+ +K   K+  V   VE        KG+ +     +     +   H +   F+ D      P H  A GL Y G+ P  +++ ++   E +++   E  +   + +RTEGIIPA E+ HA+A  ++ A   KE+ +  +
Sbjct:  110 HGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIP-----VNSGSRTLKD----------AINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDK---KVKLV--GVEAGG-----KGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLA---KEMSRDEI 365          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_METVO (Tryptophan synthase beta chain OS=Methanococcus voltae GN=trpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.158e-16
Identity = 77/270 (28.52%), Postives = 123/270 (45.56%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEV-AATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--------AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTI 763
            H    + + +LFGL  E++  R   +++      M+  GAKV P      + G K+L+           A++EA     AT  +T Y LG+V+        V   Q+VIG+E  KQ ME     PD ++ C GGGSN  GL  PF+   ++   N   + V+     +  KG+     G +        +H +   F+ D           + GL Y G+ P  ++++ L  ++  S    +  +  ++  RTEGIIPA E++HAIA  I
Sbjct:  120 HGVGTSMAGALFGLETEIFMGRVDTERQQPNVARMKLLGAKVTP-----VDTGSKVLKD----------AVNEAMRNWTATFENTHYLLGTVMGPHPFPTMVRDFQSVIGKEVKKQIMEQEERLPDYLVACIGGGSNAMGLFHPFLSNNISTG-NDDAKNVKMIGIEAAGKGLNTSLHGASITKGEKGVLHGMLSYFLQDEDGQIEEAYSISAGLDYPGIGPEHAYLHNLGRVQYASATDKQALKAFMELTRTEGIIPALESSHAIAYAI 373          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.043e-16
Identity = 80/263 (30.42%), Postives = 111/263 (42.21%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDF--GDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++  +    ++      MQ  GA V P  S                  +L  A SEA     TN +T  Y LGSV         V     VIGEE  +Q  +A G +PD+++ C GGGSN  GL   F+ +K    I      VE  A   +  G +A     G    +   M +     D   +  H  + GL Y G+ P  S++ E+   E  ++  TE  +     ++ EGIIPA ET HA A
Sbjct:  138 HGVATATVCARFGLECIIYMGKEDMRRQALNVFRMQLLGASVRPVTS---------------GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMI-----GVE-AAGDGVETGRHAATITEGRVGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFA 379          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CLONN (Tryptophan synthase beta chain OS=Clostridium novyi (strain NT) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.043e-16
Identity = 78/268 (29.10%), Postives = 118/268 (44.03%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEV-AATNADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTA-----GMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR 766
            H  A A + +LFG+ C ++       ++      M+  GAK+ P  S                 G+L  A+ EA +    ++ DT Y LGS +        V   Q +IGEE   Q +   G  PD +I C GGGSN  GL +PFI+++     N  I  VE      +  G +   F D       GM  ++     G+      I AG L Y G+ P  +++ ++   + +SI   E  +        EGIIPA E++HAIA T++
Sbjct:  112 HGVATATAAALFGMECTIFMGEEDIKRQKLNTFKMELLGAKIKPVKS---------------GNGTLKDAVDEAIKQWVKSSDDTFYVLGSAVGPHPYPTMVREFQKIIGEETKDQILRMEGRLPDTLIACVGGGSNAIGLFYPFIKDE-----NIEIIGVE-AGGKGVETGEHGAAFADGRVGVIHGMKTVIMEDDNGNVKEAYSISAG-LDYPGVGPEHAYLNDIGRAKYVSITDEEAVEAFKYLCANEGIIPALESSHAIAYTMK 357          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BACWK (Tryptophan synthase beta chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.043e-16
Identity = 81/276 (29.35%), Postives = 126/276 (45.65%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREK---LNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELE 793
            H  A A  C+LFGL C ++       ++      M+  GAKV               +   +  G+L  A++EA     ++  DT Y +GSVL        V   Q+VIG+E  KQ EA+ G+ P+ ++ C GGGSN  G+ +PF+ ++   L G +    + V       +LTKG      G   G    +  +  G       I A GL Y G+ P  S + ++  +   SI   E  +      + EGIIPA E++HA+A  ++ A + K+ E
Sbjct:  119 HGVATATVCALFGLECVIFMGEEDVRRQKLNVFRMELLGAKV---------------ESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYG-VEAAGKGVHTEKHAATLTKG----SVGVLHGSMMYLLQNEEGQIQEAHSISA-GLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDE 373          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB1_WOLSU (Tryptophan synthase beta chain 1 OS=Wolinella succinogenes GN=trpB1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.043e-16
Identity = 78/281 (27.76%), Postives = 123/281 (43.77%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATN-ADTKYCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTA-WPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRLSD 811
            H  ALA + + FG+ CE+        ++    + M+  GAKV P        G + L+           A+  A E    + A+  Y +GSV+        V   Q+V+G E  +Q +E  GE PD I+ C GGGSN  G+   FI + +       +  VEP     SL +   +  +G    M     +     D  P  +H  A GL Y  + P  ++++E+    ++ +   E  +     +R EGIIPA E+ HAIA  ++       L K+RL +
Sbjct:  124 HGVALATAAAYFGMECEIHMGEVDIAKEHPNVIRMKMLGAKVVP-----VSFGERTLKE----------AVDSAFEAYLKDPANAIYAIGSVVGPHPFPKMVRDFQSVVGAEAKEQFLEMTGELPDHIVACVGGGSNAMGIFSAFIDDPVE------LWGVEPLGKGKSLGEHAASLSYGKEGVMHGFNSIMLQNEDGSPASVHSVASGLDYPSVGPEHAYLHEIGRTHSVGVSDEEAIKNFFALSRLEGIIPAIESAHAIAYGMK-------LAKERLGE 376          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 80/263 (30.42%), Postives = 111/263 (42.21%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDF--GDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++  +    ++      MQ  GA V P  S                  +L  A SEA     TN +T  Y LGSV         V     VIGEE  +Q  +A G +PD+++ C GGGSN  GL   F+ +K    I      VE  A   +  G +A     G    +   M +     D   +  H  + GL Y G+ P  S++ E+   E  ++  TE  +     ++ EGIIPA ET HA A
Sbjct:  138 HGVATATVCARFGLECIIYMGKEDMRRQALNVFRMQLLGASVRPVTS---------------GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMI-----GVE-AAGDGVETGRHAATITEGRIGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFA 379          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 78/271 (28.78%), Postives = 115/271 (42.44%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQMEAV--GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVE-----------PTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ +GL C V+       ++      M   GA V P      E+G K L+           A++EA      N D T Y +G+V         V   Q+VIG EC+ QM  +  G  PD ++ C GGGSN  G+  P+I  + N ++  V  A E               P +  G   Y   +  G   + + H++          + GL Y G+ P  +++ ++   E + I  TE  Q      RTEGIIPA E+ HA+A
Sbjct:  120 HGVATATICARYGLECVVYMGSEDVKRQSPNVYRMNLLGATVVP-----VESGSKTLKD----------ALNEAMRDWVANVDNTFYIIGTVAGPHPYPMMVRDFQSVIGTECLSQMPEMNAGRQPDAVVACVGGGSNAMGIFHPYIAHE-NTRLIGVEAAGEGLDSGKHSASLQRGLPGVLHGNRTYVLQNDDGQ--VTETHSI----------SAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVA 362          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB1_PYRAB3.610e-1627.80Tryptophan synthase beta chain 1 OS=Pyrococcus aby... [more]
TRPB_THEP34.715e-1629.34Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB1_PYRFU4.715e-1628.17Tryptophan synthase beta chain 1 OS=Pyrococcus fur... [more]
TRPB_METVO6.158e-1628.52Tryptophan synthase beta chain OS=Methanococcus vo... [more]
TRPB_PROM18.043e-1630.42Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_CLONN8.043e-1629.10Tryptophan synthase beta chain OS=Clostridium novy... [more]
TRPB_BACWK8.043e-1629.35Tryptophan synthase beta chain OS=Bacillus weihens... [more]
TRPB1_WOLSU8.043e-1627.76Tryptophan synthase beta chain 1 OS=Wolinella succ... [more]
TRPB_PROMT1.050e-1530.42Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_POLNA1.050e-1528.78Tryptophan synthase beta chain OS=Polaromonas naph... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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