EY656642

Overview
NameEY656642
Unique NameEY656642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.792e-15
Identity = 82/269 (30.48%), Postives = 117/269 (43.49%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGK------INPVIRAVEPTAWP-SLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++      +++      M+  GA+V P      EAG           G+L  A SEA     TN +T  Y LGSV         V     VIG+E   Q +E  G  PDI++ C GGGSN  GL + F+ E   +L G       +N    A   T     +  G  +Y   D  G   +++ H++          + GL Y G+ P  S++ ++   E  S+   +      + +R EGIIPA ET HAIA
Sbjct:  135 HGVATATVCARFGLECVIYMGVHDMERQALNVFRMRLMGAEVRP-----VEAGT----------GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIRLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQ--VIEAHSI----------SAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIA 376          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.792e-15
Identity = 81/269 (30.11%), Postives = 115/269 (42.75%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGK------INPVIRAVEPTAWP-SLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++      +++      M+  GA+V P  +                 G+L  A SEA     TN +T  Y LGSV         V     VIG+E   Q +E  G  PDI++ C GGGSN  GL + F+ E   KL G       +N    A   T     +  G  +Y   D  G   +++ H++          + GL Y G+ P  S++ ++   E  S+   E      + +R EGIIPA ET HAIA
Sbjct:  135 HGVATATVCARFGLECVIYMGVHDMERQALNVFRMRLMGAEVRPVAA---------------GTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIKLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQ--VIEAHSI----------SAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIA 376          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.340e-15
Identity = 79/259 (30.50%), Postives = 109/259 (42.08%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++       ++      M+  GA+V               ++  S   +L  A SEA     +N +T  Y LGSV         V     VIGEE  KQ +E+ G  PDI++ C GGGSN  GL  PF++EK + ++  V  A            +     G   G   L+     G       I A GL Y G+ P  S++ ++   E  S+  TE        +  EGIIPA ET HA A
Sbjct:  137 HGVATATVCARFGLKCIIYMGAEDIKRQSLNVFRMKLLGAEV---------------KVVTSGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEK-SVRLIGVEAAGSGVNTDKHAATITKGSVGILHGSMSLLLQDKNGQVQEAHSISA-GLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFA 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.340e-15
Identity = 83/262 (31.68%), Postives = 111/262 (42.37%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQ-MEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C ++       ++      M+  GA+V            K++    S   +L  A SEA     +N +T  Y LGSV         V     VIGEE  KQ +E+ G  PDI++ C GGGSN  GL  PF++E   +L G               ++TKG      G   G   L+     G       I A GL Y G+ P  SH+ E+   E  S+   E        +  EGIIPA ET+HA A
Sbjct:  137 HGVATATVCARFGLKCIIYMGAEDIKRQSLNVFRMKLLGAEV------------KVVN---SGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSFPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKG----SVGILHGSMSLLLQDDNGQVQEAHSISA-GLDYPGVGPEHSHLKEIGRAEYGSVTDQEALDALKLVSELEGIIPALETSHAFA 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.340e-15
Identity = 80/276 (28.99%), Postives = 125/276 (45.29%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREK---LNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELE 793
            H  A A  C+L GL C ++       ++      M+  GAKV               +   +  G+L  A++EA     ++  DT Y +GSVL        V   Q+VIG+E  KQ EA+ G+ P+ ++ C GGGSN  G+ +PF+ ++   L G +    + V       +LTKG      G   G    +  +  G       I A GL Y G+ P  S + ++  +   SI   E  +      + EGIIPA E++HA+A  ++ A + K+ E
Sbjct:  119 HGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKV---------------ESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYG-VEAAGKGVHTEQHAATLTKG----SVGVLHGSMMYLLQNEEGQIQEAHSISA-GLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAAQMKKDE 373          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.056e-15
Identity = 80/259 (30.89%), Postives = 108/259 (41.70%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTK-YCLGSVLNH------VLLHQTVIGEECIKQM-EAVGETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A  C+ FGL C V+       ++      M+  GA VHP  +                  +L  A SEA     TN +T  Y LGSV         V     VIG+E  +Q  EA G  PD+++ C GGGSN  GL  PF+ E  + ++  V  A +  A       +     G   G   L+     G       I AG L Y G+ P  S++ E+   E  ++   E  +     +R EGIIPA ET HA A
Sbjct:  137 HGVATATVCARFGLECVVYMGAEDMRRQALNVFRMRLLGATVHPVTA---------------GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFV-ECTDVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAG-LDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFA 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.056e-15
Identity = 81/279 (29.03%), Postives = 120/279 (43.01%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNAD-TKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHD---FIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRL 805
            H  A A   + FGL+C ++      +++      M+  GA+V P  +                 G+L  A++EA     TN D T Y +G+V         V   Q VIG+E  +QM+A  G  PD ++ C GGGSN  GL  PF+ +K     +  I  VE   +   T    A   G   G+    +   L  D    I     + GL Y G+ P  + ++++  +E  S+   E      Q  R EGIIPA E+ HA+A+  +   R   L K  L
Sbjct:  123 HGVATATVAARFGLDCVIYMGTTDIERQQANVFRMKLLGAEVIPVVA---------------GTGTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQMQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDK-----SVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFK---RAPNLPKDHL 378          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJD (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.056e-15
Identity = 69/256 (26.95%), Postives = 115/256 (44.92%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNADTKYCLGSVLNHVLLHQTVIGEECIKQMEAVGETPDIIIGCTGGGSNFGGLSFPFIRE---KLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIH--AGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIA 754
            H  A A + +L GL CE++       ++      M+  GAK+H       ++G K L+   ++     +   +       +A   Y    ++ H    Q++IG+EC  Q++ + +  D II   GGGSN  G+ + FI++   KL G     +         +L KG    + G   GM   +    LG+     P+H  + GL Y G+ PL + ++E    +  +I   EC Q      + EGII A E++HA+A
Sbjct:  112 HGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHA-----VQSGLKTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVTHF---QSIIGKECKMQLQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGVDTLYHAATLNKG----ETGIIHGMKTKVLQDDLGNIL---PVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALA 352          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BRAJA (Tryptophan synthase beta chain OS=Bradyrhizobium japonicum GN=trpB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.992e-15
Identity = 80/294 (27.21%), Postives = 123/294 (41.84%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIR---------EKLNGKINPVIRAVEPTAWPSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELEKQRLSDGMCAMDI 832
            H  A A  C+ FGL C V+      +++    + M+  GAKV P      ++G + L+           A++EA     TN  +T YC+G+V         V   Q++IG E   QM+ V G  PD ++ C GGGSN  GL  PF+          E     +  +  A      P +  G   Y   D  G   +   H++          + GL Y G+ P  S ++E+  +  +S    E        ++ EGIIPA E  HAIA       +  EL  +R  D +  +++
Sbjct:  126 HGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVP-----VQSGTRTLKD----------AMNEALRDWVTNVHNTFYCIGTVAGPHPYPTLVRDFQSIIGNETKAQMQEVEGRLPDSLVACIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDADGQ--IQDAHSI----------SAGLDYPGIGPEHSWLHEIGRVNYLSATDDEALAAFQLLSKLEGIIPALEPAHAIA-------KVMELAPKRAKDHLMVVNL 385          
BLAST of EY656642 vs. ExPASy Swiss-Prot
Match: TRPB_BACC2 (Tryptophan synthase beta chain OS=Bacillus cereus (strain G9842) GN=trpB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.992e-15
Identity = 80/276 (28.99%), Postives = 124/276 (44.93%), Query Frame = 2
Query:    2 HASALAFSCSLFGLNCEVWQVRASYDQKPYRRLMMQTWGAKVHPSPSDITEAGRKILQMDPSSPGSLGIAISEAAEVAATNA-DTKYCLGSVLNH------VLLHQTVIGEECIKQMEAV-GETPDIIIGCTGGGSNFGGLSFPFIREK---LNGKINPVIRAVEPTAW-PSLTKGVYAYDFGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELXLMEAISIPQTECFQCAIQFARTEGIIPAAETTHAIADTIR*ALRCKELE 793
            H  A A  C+L GL C ++       ++      M+  GAKV               +   +  G+L  A++EA     ++  DT Y +GSVL        V   Q+VIG E  KQ EA+ G+ P+ ++ C GGGSN  G+ +PF+ ++   L G +    + V       +LTKG      G   G    +  +  G       I A GL Y G+ P  S + ++  +   SI   E  +      + EGIIPA E++HA+A  ++ A + K+ E
Sbjct:  119 HGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKV---------------ESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYG-VEAAGKGVHTEKHAATLTKG----SVGVLHGSMMYLLQNEEGQIQEAHSISA-GLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPKMKKDE 373          
The following BLAST results are available for this feature:
BLAST of EY656642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
TRPB_ANAVT1.792e-1530.48Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB2_ANASP1.792e-1530.11Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_PROM52.340e-1530.50Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM02.340e-1531.68Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_BACC12.340e-1528.99Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_SYNPW3.056e-1530.89Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PSEF53.056e-1529.03Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_CAMJD3.056e-1526.95Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_BRAJA3.992e-1527.21Tryptophan synthase beta chain OS=Bradyrhizobium j... [more]
TRPB_BACC23.992e-1528.99Tryptophan synthase beta chain OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656642 ID=EY656642; Name=EY656642; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCACTGGCCTTCTCATGCAGCTTATTTGGTCTCAACTGTG
AGGTATGGCAGGTCCGTGCTTCTTATGATCAGAAACCATATCGAAGATTA
ATGATGCAGACTTGGGGTGCAAAAGTACATCCATCTCCATCTGACATCAC
TGAAGCAGGTAGGAAAATTCTGCAAATGGATCCATCAAGCCCGGGAAGTT
TAGGAATAGCCATTTCAGAAGCTGCAGAGGTTGCTGCTACAAATGCTGAT
ACAAAGTATTGCCTGGGCAGCGTCCTCAATCATGTCTTGCTACACCAGAC
TGTCATAGGAGAAGAGTGTATAAAGCAGATGGAGGCTGTAGGAGAAACCC
CAGACATCATCATAGGGTGTACTGGTGGTGGATCCAATTTTGGCGGGCTC
AGCTTCCCATTCATCCGAGAGAAACTCAATGGAAAAATCAACCCTGTAAT
AAGAGCAGTTGAACCTACTGCATGGCCTTCTCTAACAAAAGGCGTGTATG
CTTATGATTTTGGTGATACCGCAGGGATGACTCCATTGATGAAGATGCAT
ACACTTGGGCACGACTTCATTCCTGATCCAATTCATGCTGGAGGATTACG
TTACCATGGTATGGCACCATTATTATCACATGTCTATGAATTANGTCTCA
TGGAAGCAATTTCAATTCCTCAGACCGAGTGCTTTCAATGTGCTATACAA
TTTGCTAGAACTGAAGGGATAATACCAGCGGCAGAAACGACTCATGCAAT
TGCAGACACCATCAGGTAAGCCCTCCGNTGTAAGGAACTGGAGAAGCAAA
GGTTATCTGACGGAATGTGTGCCATGGACATTTTGACCTGCTTCTATGAG
AGTACTTGCAAGGAAAGATGGTGACTCGCCGTTGCACAAAGAAATACAGA
GCTCTGACACAATCTCAGTGATGCATGAG
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